Analysis of interatomic Contacts of Structural Units in PDB entry:
2YK0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2YK0 entry

There is 1 chain in PDB entry 2YK0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 19ALA 716
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 2YK0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
21 38Right-handed alpha
Helix 2
2
A
44 49Right-handed alpha
Helix 3
3
A
51 55Right-handed 310
Helix 4
4
A
59 66Right-handed alpha
Helix 5
5
A
132 137Right-handed alpha
Helix 6
6
A
140 146Right-handed 310
Helix 7
7
A
153 174Right-handed alpha
Helix 8
8
A
185 205Right-handed alpha
Helix 9
9
A
215 232Right-handed alpha
Helix 10
10
A
233 240Right-handed alpha
Helix 11
11
A
248 270Right-handed alpha
Helix 12
12
A
296 300Right-handed 310
Helix 13
13
A
305 309Right-handed 310
Helix 14
14
A
310 338Right-handed alpha
Helix 15
15
A
341 344Right-handed 310
Helix 16
16
A
359 363Right-handed 310
Helix 17
17
A
370 408Right-handed alpha
Helix 18
18
A
414 424Right-handed alpha
Helix 19
19
A
428 439Right-handed alpha
Helix 20
20
A
439 444Right-handed alpha
Helix 21
21
A
456 461Right-handed alpha
Helix 22
22
A
464 468Right-handed 310
Helix 23
23
A
495 500Right-handed alpha
Helix 24
24
A
517 520Right-handed 310
Helix 25
25
A
522 527Right-handed alpha
Helix 26
26
A
572 599Right-handed alpha
Helix 27
27
A
607 634Right-handed alpha
Helix 28
28
A
643 655Right-handed alpha
Helix 29
29
A
655 663Right-handed alpha
Helix 30
30
A
665 671Right-handed alpha
Helix 31
31
A
694 714Right-handed alpha
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There are 4 sheets in PDB entry 2YK0. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
279 281first strand
Strand 2
A
287 289anti-parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
339 340first strand
Strand 2
A
345 346anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
475 477first strand
Strand 2
A
483 485anti-parallel
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There are 4 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
508 515first strand
Strand 2
A
539 549anti-parallel
Strand 3
A
552 557anti-parallel
Strand 4
A
569 571anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il