Analysis of interatomic Contacts of Structural Units in PDB entry:
2YK3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2YK3 entry

There are 6 chains in PDB entry 2YK3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 5PRO 82
A
 LYS 84GLY 114
B
 ALA 5PRO 82
B
 LYS 84GLY 114
C
 ALA 5PRO 82
C
 LYS 84GLY 114
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 2YK3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
13 25Right-handed alpha
Helix 2
2
A
60 66Right-handed alpha
Helix 3
3
A
71 81Right-handed alpha
Helix 4
4
A
81 86Right-handed alpha
Helix 5
5
A
98 111Right-handed alpha
Helix 6
6
B
13 25Right-handed alpha
Helix 7
7
B
60 66Right-handed alpha
Helix 8
8
B
71 81Right-handed alpha
Helix 9
9
B
81 86Right-handed alpha
Helix 10
10
B
98 111Right-handed alpha
Helix 11
11
C
13 25Right-handed alpha
Helix 12
12
C
60 66Right-handed alpha
Helix 13
13
C
71 81Right-handed alpha
Helix 14
14
C
81 86Right-handed alpha
Helix 15
15
C
98 111Right-handed alpha
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There are no sheets in PDB entry 2YK3
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il