Analysis of interatomic Contacts of Structural Units in PDB entry:
2YK6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2YK6 entry

There is 1 chain in PDB entry 2YK6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 49PRO 373
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 2YK6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
57 70Right-handed alpha
Helix 2
2
A
86 98Right-handed alpha
Helix 3
3
A
121 130Right-handed alpha
Helix 4
4
A
143 148Right-handed alpha
Helix 5
5
A
148 154Right-handed alpha
Helix 6
6
A
166 171Right-handed 310
Helix 7
7
A
172 178Right-handed 310
Helix 8
8
A
178 182Right-handed 310
Helix 9
9
A
186 205Right-handed alpha
Helix 10
10
A
258 260Right-handed 310
Helix 11
11
A
261 272Right-handed alpha
Helix 12
12
A
298 310Right-handed alpha
Helix 13
13
A
323 329Right-handed alpha
Helix 14
14
A
345 349Right-handed 310
Helix 15
15
A
350 360Right-handed alpha
Helix 16
16
A
368 372Right-handed 310
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There are 3 sheets in PDB entry 2YK6. Click on sheet of interest to get list of strands forming it: AA, AB, AC,

There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
51 55first strand
Strand 2
A
76 82parallel
Strand 3
A
102 107parallel
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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
137 141first strand
Strand 2
A
159 163parallel
Strand 3
A
210 213parallel
Strand 4
A
228 231parallel
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There are 6 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
291 292first strand
Strand 2
A
276 278parallel
Strand 3
A
249 254parallel
Strand 4
A
314 319parallel
Strand 5
A
334 341parallel
Strand 6
A
364 367parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il