Analysis of interatomic Contacts of Structural Units in PDB entry:
2YL5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 2YL5 entry

There are 4 chains in PDB entry 2YL5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	HIS 625	LEU 1041
B	GLY 623	GLY 1040
C	GLY 623	GLY 1040
D	HIS 625	GLN 1039

There are 69 helices in PDB entry 2YL5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	625	631	Right-handed alpha
Helix 2	2	A	645	660	Right-handed alpha
Helix 3	3	A	690	706	Right-handed alpha
Helix 4	4	A	715	728	Right-handed alpha
Helix 5	5	A	743	753	Right-handed alpha
Helix 6	6	A	774	793	Right-handed alpha
Helix 7	7	A	807	811	Right-handed 310
Helix 8	8	A	814	822	Right-handed alpha
Helix 9	9	A	824	842	Right-handed alpha
Helix 10	10	A	854	858	Right-handed 310
Helix 11	11	A	883	890	Right-handed alpha
Helix 12	12	A	898	902	Right-handed 310
Helix 13	13	A	908	912	Right-handed 310
Helix 14	14	A	915	926	Right-handed alpha
Helix 15	15	A	960	974	Right-handed alpha
Helix 16	16	A	983	991	Right-handed alpha
Helix 17	17	A	1002	1014	Right-handed alpha
Helix 18	18	A	1023	1039	Right-handed alpha
Helix 19	19	B	623	631	Right-handed alpha
Helix 20	20	B	645	660	Right-handed alpha
Helix 21	21	B	690	706	Right-handed alpha
Helix 22	22	B	715	728	Right-handed alpha
Helix 23	23	B	743	753	Right-handed alpha
Helix 24	24	B	774	793	Right-handed alpha
Helix 25	25	B	807	811	Right-handed 310
Helix 26	26	B	814	822	Right-handed alpha
Helix 27	27	B	824	841	Right-handed alpha
Helix 28	28	B	854	858	Right-handed 310
Helix 29	29	B	883	890	Right-handed alpha
Helix 30	30	B	898	902	Right-handed 310
Helix 31	31	B	915	926	Right-handed alpha
Helix 32	32	B	960	974	Right-handed alpha
Helix 33	33	B	983	991	Right-handed alpha
Helix 34	34	B	1004	1014	Right-handed alpha
Helix 35	35	B	1023	1038	Right-handed alpha
Helix 36	36	C	623	631	Right-handed alpha
Helix 37	37	C	645	660	Right-handed alpha
Helix 38	38	C	690	706	Right-handed alpha
Helix 39	39	C	715	729	Right-handed alpha
Helix 40	40	C	743	753	Right-handed alpha
Helix 41	41	C	774	793	Right-handed alpha
Helix 42	42	C	814	822	Right-handed alpha
Helix 43	43	C	824	842	Right-handed alpha
Helix 44	44	C	851	853	Right-handed 310
Helix 45	45	C	854	858	Right-handed 310
Helix 46	46	C	883	890	Right-handed alpha
Helix 47	47	C	898	902	Right-handed 310
Helix 48	48	C	915	926	Right-handed alpha
Helix 49	49	C	960	974	Right-handed alpha
Helix 50	50	C	983	991	Right-handed alpha
Helix 51	51	C	1002	1014	Right-handed alpha
Helix 52	52	C	1023	1039	Right-handed alpha
Helix 53	53	D	625	631	Right-handed alpha
Helix 54	54	D	645	660	Right-handed alpha
Helix 55	55	D	690	706	Right-handed alpha
Helix 56	56	D	715	729	Right-handed alpha
Helix 57	57	D	743	753	Right-handed alpha
Helix 58	58	D	774	793	Right-handed alpha
Helix 59	59	D	814	822	Right-handed alpha
Helix 60	60	D	824	841	Right-handed alpha
Helix 61	61	D	851	853	Right-handed 310
Helix 62	62	D	854	858	Right-handed 310
Helix 63	63	D	883	890	Right-handed alpha
Helix 64	64	D	898	902	Right-handed 310
Helix 65	65	D	915	926	Right-handed alpha
Helix 66	66	D	960	974	Right-handed alpha
Helix 67	67	D	983	991	Right-handed alpha
Helix 68	68	D	1001	1014	Right-handed alpha
Helix 69	69	D	1023	1039	Right-handed alpha

There are 14 sheets in PDB entry 2YL5. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, BB, BC, CA, CB, CC, CD, DA, DB, C, DD,

There are 10 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	632	638	first strand
Strand 2	A	943	951	parallel
Strand 3	A	903	904	parallel
Strand 4	A	663	669	first strand
Strand 5	A	732	739	first strand
Strand 6	A	798	802	first strand
Strand 7	A	845	849	first strand
Strand 8	A	868	871	first strand
Strand 9	A	894	896	first strand
Strand 10	A	632	638	parallel

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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	682	684	first strand
Strand 2	A	687	689	anti-parallel

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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	759	761	first strand
Strand 2	A	765	770	anti-parallel

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There are 10 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	632	638	first strand
Strand 2	B	943	951	parallel
Strand 3	B	663	669	first strand
Strand 4	B	732	739	first strand
Strand 5	B	798	802	first strand
Strand 6	B	845	849	first strand
Strand 7	B	868	870	first strand
Strand 8	B	894	896	first strand
Strand 9	B	903	904	first strand
Strand 10	B	632	638	parallel

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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	682	684	first strand
Strand 2	B	687	689	anti-parallel

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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	759	761	first strand
Strand 2	B	765	770	anti-parallel

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There are 10 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	632	638	first strand
Strand 2	C	943	951	parallel
Strand 3	C	663	669	first strand
Strand 4	C	732	739	first strand
Strand 5	C	798	802	first strand
Strand 6	C	845	849	first strand
Strand 7	C	868	871	first strand
Strand 8	C	894	896	first strand
Strand 9	C	903	904	first strand
Strand 10	C	632	638	parallel

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There are 2 strands in CB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	682	684	first strand
Strand 2	C	687	689	anti-parallel

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There are 2 strands in CC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	759	761	first strand
Strand 2	C	765	770	anti-parallel

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There are 2 strands in CD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	875	876	first strand
Strand 2	C	879	880	anti-parallel

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There are 10 strands in DA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	632	638	first strand
Strand 2	D	943	951	parallel
Strand 3	D	663	669	first strand
Strand 4	D	732	739	first strand
Strand 5	D	798	802	first strand
Strand 6	D	845	849	first strand
Strand 7	D	868	871	first strand
Strand 8	D	894	896	first strand
Strand 9	D	903	904	first strand
Strand 10	D	632	638	parallel

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There are 2 strands in DB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	682	684	first strand
Strand 2	D	687	689	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	759	761	first strand
Strand 2	D	765	770	anti-parallel

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There are 2 strands in DD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	875	876	first strand
Strand 2	D	879	880	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 2YL5

Analysis of interatomic Contacts of Structural Units in PDB entry:
2YL5