Analysis of interatomic Contacts of Structural Units in PDB entry:
2YLM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2YLM entry

There is 1 chain in PDB entry 2YLM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 555ASN 1083
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 2YLM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
560 562Right-handed 310
Helix 2
2
A
573 576Right-handed 310
Helix 3
3
A
601 614Right-handed alpha
Helix 4
4
A
616 618Right-handed 310
Helix 5
5
A
639 644Right-handed alpha
Helix 6
6
A
647 653Right-handed alpha
Helix 7
7
A
666 671Right-handed alpha
Helix 8
8
A
713 715Right-handed 310
Helix 9
9
A
716 725Right-handed alpha
Helix 10
10
A
752 757Right-handed alpha
Helix 11
11
A
772 778Right-handed 310
Helix 12
12
A
782 792Right-handed alpha
Helix 13
13
A
818 831Right-handed alpha
Helix 14
14
A
833 835Right-handed 310
Helix 15
15
A
860 865Right-handed alpha
Helix 16
16
A
884 890Right-handed alpha
Helix 17
17
A
917 927Right-handed alpha
Helix 18
18
A
959 962Right-handed 310
Helix 19
19
A
976 980Right-handed 310
Helix 20
20
A
1016 1029Right-handed alpha
Helix 21
21
A
1031 1036Right-handed alpha
Helix 22
22
A
1059 1063Right-handed 310
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There are 5 sheets in PDB entry 2YLM. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
592 597first strand
Strand 2
A
564 571anti-parallel
Strand 3
A
658 664parallel
Strand 4
A
620 627anti-parallel
Strand 5
A
633 635anti-parallel
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There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
698 708first strand
Strand 2
A
684 693anti-parallel
Strand 3
A
764 770parallel
Strand 4
A
732 739anti-parallel
Strand 5
A
742 745anti-parallel
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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
809 814first strand
Strand 2
A
793 800anti-parallel
Strand 3
A
875 880parallel
Strand 4
A
837 840anti-parallel
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There are 5 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
905 910first strand
Strand 2
A
894 899anti-parallel
Strand 3
A
969 974parallel
Strand 4
A
939 945anti-parallel
Strand 5
A
948 953anti-parallel
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There are 5 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1002 1012first strand
Strand 2
A
987 995anti-parallel
Strand 3
A
1076 1080parallel
Strand 4
A
1039 1044anti-parallel
Strand 5
A
1047 1050anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il