Analysis of interatomic Contacts of Structural Units in PDB entry:
2YLS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2YLS entry

There is 1 chain in PDB entry 2YLS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 11THR 542
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 2YLS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
25 38Right-handed alpha
Helix 2
2
A
53 58Right-handed alpha
Helix 3
3
A
77 84Right-handed alpha
Helix 4
4
A
92 107Right-handed alpha
Helix 5
5
A
108 111Right-handed 310
Helix 6
6
A
163 167Right-handed 310
Helix 7
7
A
175 177Right-handed 310
Helix 8
8
A
195 206Right-handed alpha
Helix 9
9
A
231 241Right-handed alpha
Helix 10
10
A
241 251Right-handed alpha
Helix 11
11
A
269 284Right-handed alpha
Helix 12
12
A
286 291Right-handed 310
Helix 13
13
A
298 315Right-handed alpha
Helix 14
14
A
319 327Right-handed alpha
Helix 15
15
A
343 348Right-handed alpha
Helix 16
16
A
393 398Right-handed alpha
Helix 17
17
A
403 407Right-handed 310
Helix 18
18
A
408 413Right-handed alpha
Helix 19
19
A
440 444Right-handed 310
Helix 20
20
A
445 467Right-handed alpha
Helix 21
21
A
475 492Right-handed alpha
Helix 22
22
A
494 498Right-handed 310
Helix 23
23
A
520 534Right-handed alpha
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There are 7 sheets in PDB entry 2YLS. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
113 114first strand
Strand 2
A
42 45parallel
Strand 3
A
16 22parallel
Strand 4
A
140 148parallel
Strand 5
A
431 433anti-parallel
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There are 7 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
113 114first strand
Strand 2
A
42 45parallel
Strand 3
A
16 22parallel
Strand 4
A
140 148parallel
Strand 5
A
130 135anti-parallel
Strand 6
A
119 125anti-parallel
Strand 7
A
400 402parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
431 433first strand
Strand 2
A
140 148anti-parallel
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There are 5 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
170 173first strand
Strand 2
A
382 385parallel
Strand 3
A
188 192parallel
Strand 4
A
211 216parallel
Strand 5
A
353 357parallel
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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
222 224first strand
Strand 2
A
339 341parallel
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There are 3 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
363 367first strand
Strand 2
A
370 373anti-parallel
Strand 3
A
377 379anti-parallel
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There are 2 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
471 474first strand
Strand 2
A
539 542anti-parallel
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