Analysis of interatomic Contacts of Structural Units in PDB entry:
2YM0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2YM0 entry

There are 2 chains in PDB entry 2YM0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 131THR 329
B
 MET 131ILE 330
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 2YM0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
132 174Right-handed alpha
Helix 2
2
A
190 205Right-handed alpha
Helix 3
3
A
227 238Right-handed alpha
Helix 4
4
A
241 243Right-handed 310
Helix 5
5
A
258 271Right-handed alpha
Helix 6
6
A
284 328Right-handed alpha
Helix 7
7
B
132 173Right-handed alpha
Helix 8
8
B
190 205Right-handed alpha
Helix 9
9
B
227 238Right-handed alpha
Helix 10
10
B
241 243Right-handed 310
Helix 11
11
B
258 271Right-handed alpha
Helix 12
12
B
284 328Right-handed alpha
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There are 4 sheets in PDB entry 2YM0. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB,

There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
178 180first strand
Strand 2
A
186 189anti-parallel
Strand 3
A
280 283anti-parallel
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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
213 215first strand
Strand 2
A
251 255anti-parallel
Strand 3
A
245 248anti-parallel
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There are 3 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
178 180first strand
Strand 2
B
186 189anti-parallel
Strand 3
B
280 283anti-parallel
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There are 3 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
213 215first strand
Strand 2
B
251 255anti-parallel
Strand 3
B
245 248anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il