Analysis of interatomic Contacts of Structural Units in PDB entry:
2YM9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2YM9 entry

There are 4 chains in PDB entry 2YM9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 32SER 339
B
 PRO 35ALA 337
C
 THR 128GLY 343
D
 THR 127GLY 343
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 2YM9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
41 65Right-handed alpha
Helix 2
2
A
69 94Right-handed alpha
Helix 3
3
A
98 110Right-handed alpha
Helix 4
4
A
113 117Right-handed 310
Helix 5
5
A
130 149Right-handed alpha
Helix 6
6
A
149 172Right-handed alpha
Helix 7
7
A
173 176Right-handed 310
Helix 8
8
A
190 205Right-handed alpha
Helix 9
9
A
227 238Right-handed alpha
Helix 10
10
A
241 243Right-handed 310
Helix 11
11
A
258 271Right-handed alpha
Helix 12
12
A
284 335Right-handed alpha
Helix 13
13
B
41 45Right-handed 310
Helix 14
14
B
46 62Right-handed alpha
Helix 15
15
B
69 92Right-handed alpha
Helix 16
16
B
98 109Right-handed alpha
Helix 17
17
B
134 149Right-handed alpha
Helix 18
18
B
149 172Right-handed alpha
Helix 19
19
B
173 176Right-handed 310
Helix 20
20
B
190 207Right-handed alpha
Helix 21
21
B
227 239Right-handed alpha
Helix 22
22
B
241 243Right-handed 310
Helix 23
23
B
258 271Right-handed alpha
Helix 24
24
B
284 333Right-handed alpha
Helix 25
25
C
130 139Right-handed alpha
Helix 26
26
C
142 147Right-handed alpha
Helix 27
27
C
149 171Right-handed alpha
Helix 28
28
C
190 205Right-handed alpha
Helix 29
29
C
227 238Right-handed alpha
Helix 30
30
C
241 243Right-handed 310
Helix 31
31
C
258 272Right-handed alpha
Helix 32
32
C
285 343Right-handed alpha
Helix 33
33
D
130 137Right-handed alpha
Helix 34
34
D
148 166Right-handed alpha
Helix 35
35
D
228 237Right-handed alpha
Helix 36
36
D
258 265Right-handed alpha
Helix 37
37
D
299 340Right-handed alpha
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There are 6 sheets in PDB entry 2YM9. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB, CA, CB,

There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
178 180first strand
Strand 2
A
186 189anti-parallel
Strand 3
A
280 283anti-parallel
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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
213 215first strand
Strand 2
A
251 255anti-parallel
Strand 3
A
245 248anti-parallel
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There are 3 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
178 180first strand
Strand 2
B
186 189anti-parallel
Strand 3
B
280 283anti-parallel
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There are 3 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
213 215first strand
Strand 2
B
251 255anti-parallel
Strand 3
B
245 248anti-parallel
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There are 3 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
178 180first strand
Strand 2
C
187 189anti-parallel
Strand 3
C
280 282anti-parallel
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There are 3 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
213 215first strand
Strand 2
C
251 255anti-parallel
Strand 3
C
245 248anti-parallel
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