Analysis of interatomic Contacts of Structural Units in PDB entry:
2YMA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2YMA entry

There are 2 chains in PDB entry 2YMA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 265ASP 399
B
 ILE 266ILE 397
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 5 helices in PDB entry 2YMA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
304 308Right-handed 310
Helix 2
2
A
314 331Right-handed alpha
Helix 3
3
B
270 276Right-handed alpha
Helix 4
4
B
304 308Right-handed 310
Helix 5
5
B
314 331Right-handed alpha
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There are 4 sheets in PDB entry 2YMA. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
277 283first strand
Strand 2
A
286 291anti-parallel
Strand 3
A
299 302anti-parallel
Strand 4
A
347 355parallel
Strand 5
A
361 369anti-parallel
Strand 6
A
375 380anti-parallel
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There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
277 283first strand
Strand 2
A
286 291anti-parallel
Strand 3
A
299 302anti-parallel
Strand 4
A
347 355parallel
Strand 5
A
392 396parallel
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There are 6 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
277 283first strand
Strand 2
B
286 291anti-parallel
Strand 3
B
299 302anti-parallel
Strand 4
B
347 355parallel
Strand 5
B
361 369anti-parallel
Strand 6
B
375 380anti-parallel
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There are 5 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
277 283first strand
Strand 2
B
286 291anti-parallel
Strand 3
B
299 302anti-parallel
Strand 4
B
347 355parallel
Strand 5
B
392 396parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il