Analysis of interatomic Contacts of Structural Units in PDB entry:
2YMN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2YMN entry

There are 6 chains in PDB entry 2YMN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 21PHE 489
B
 ASN 21PHE 489
C
 ASN 21PHE 489
D
 ASN 21PHE 489
E
 ASN 21PHE 489
F
 ASN 21PHE 489
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are105 helices in PDB entry 2YMN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
23 48Right-handed alpha
Helix 2
2
A
56 71Right-handed alpha
Helix 3
3
A
112 124Right-handed alpha
Helix 4
4
A
129 148Right-handed alpha
Helix 5
5
A
150 158Right-handed alpha
Helix 6
6
A
160 167Right-handed 310
Helix 7
7
A
177 182Right-handed alpha
Helix 8
8
A
185 202Right-handed alpha
Helix 9
9
A
214 230Right-handed alpha
Helix 10
10
A
232 244Right-handed alpha
Helix 11
11
A
249 263Right-handed alpha
Helix 12
12
A
277 287Right-handed alpha
Helix 13
13
A
290 295Right-handed alpha
Helix 14
14
A
300 307Right-handed alpha
Helix 15
15
A
321 335Right-handed alpha
Helix 16
16
A
340 349Right-handed alpha
Helix 17
17
A
439 451Right-handed alpha
Helix 18
18
B
23 47Right-handed alpha
Helix 19
19
B
50 55Right-handed alpha
Helix 20
20
B
56 71Right-handed alpha
Helix 21
21
B
115 124Right-handed alpha
Helix 22
22
B
129 148Right-handed alpha
Helix 23
23
B
151 156Right-handed alpha
Helix 24
24
B
162 167Right-handed 310
Helix 25
25
B
177 184Right-handed alpha
Helix 26
26
B
186 202Right-handed alpha
Helix 27
27
B
213 230Right-handed alpha
Helix 28
28
B
232 242Right-handed alpha
Helix 29
29
B
249 263Right-handed alpha
Helix 30
30
B
277 288Right-handed alpha
Helix 31
31
B
290 295Right-handed alpha
Helix 32
32
B
300 310Right-handed alpha
Helix 33
33
B
321 334Right-handed alpha
Helix 34
34
B
340 349Right-handed alpha
Helix 35
35
B
439 450Right-handed alpha
Helix 36
36
C
21 48Right-handed alpha
Helix 37
37
C
52 55Right-handed 310
Helix 38
38
C
56 70Right-handed alpha
Helix 39
39
C
112 124Right-handed alpha
Helix 40
40
C
129 146Right-handed alpha
Helix 41
41
C
150 158Right-handed alpha
Helix 42
42
C
163 167Right-handed 310
Helix 43
43
C
177 184Right-handed alpha
Helix 44
44
C
185 200Right-handed alpha
Helix 45
45
C
208 230Right-handed alpha
Helix 46
46
C
232 244Right-handed alpha
Helix 47
47
C
249 266Right-handed alpha
Helix 48
48
C
277 287Right-handed alpha
Helix 49
49
C
290 295Right-handed alpha
Helix 50
50
C
300 309Right-handed alpha
Helix 51
51
C
323 335Right-handed alpha
Helix 52
52
C
340 348Right-handed alpha
Helix 53
53
C
354 358Right-handed 310
Helix 54
54
C
438 451Right-handed alpha
Helix 55
55
D
23 48Right-handed alpha
Helix 56
56
D
56 71Right-handed alpha
Helix 57
57
D
112 124Right-handed alpha
Helix 58
58
D
129 148Right-handed alpha
Helix 59
59
D
150 158Right-handed alpha
Helix 60
60
D
160 167Right-handed 310
Helix 61
61
D
177 182Right-handed alpha
Helix 62
62
D
185 202Right-handed alpha
Helix 63
63
D
214 230Right-handed alpha
Helix 64
64
D
232 244Right-handed alpha
Helix 65
65
D
249 263Right-handed alpha
Helix 66
66
D
277 287Right-handed alpha
Helix 67
67
D
290 295Right-handed alpha
Helix 68
68
D
300 307Right-handed alpha
Helix 69
69
D
321 335Right-handed alpha
Helix 70
70
D
340 349Right-handed alpha
Helix 71
71
D
439 451Right-handed alpha
Helix 72
72
E
23 48Right-handed alpha
Helix 73
73
E
56 71Right-handed alpha
Helix 74
74
E
112 124Right-handed alpha
Helix 75
75
E
129 148Right-handed alpha
Helix 76
76
E
150 158Right-handed alpha
Helix 77
77
E
160 167Right-handed 310
Helix 78
78
E
177 182Right-handed alpha
Helix 79
79
E
185 202Right-handed alpha
Helix 80
80
E
214 230Right-handed alpha
Helix 81
81
E
232 244Right-handed alpha
Helix 82
82
E
249 263Right-handed alpha
Helix 83
83
E
277 287Right-handed alpha
Helix 84
84
E
290 295Right-handed alpha
Helix 85
85
E
300 307Right-handed alpha
Helix 86
86
E
321 335Right-handed alpha
Helix 87
87
E
340 349Right-handed alpha
Helix 88
88
E
439 451Right-handed alpha
Helix 89
89
F
23 48Right-handed alpha
Helix 90
90
F
56 71Right-handed alpha
Helix 91
91
F
112 124Right-handed alpha
Helix 92
92
F
129 148Right-handed alpha
Helix 93
93
F
150 158Right-handed alpha
Helix 94
94
F
160 167Right-handed 310
Helix 95
95
F
177 182Right-handed alpha
Helix 96
96
F
185 202Right-handed alpha
Helix 97
97
F
214 230Right-handed alpha
Helix 98
98
F
232 244Right-handed alpha
Helix 99
99
F
249 263Right-handed alpha
Helix 100
100
F
277 287Right-handed alpha
Helix 101
101
F
290 295Right-handed alpha
Helix 102
102
F
300 307Right-handed alpha
Helix 103
103
F
321 335Right-handed alpha
Helix 104
104
F
340 349Right-handed alpha
Helix 105
105
F
439 451Right-handed alpha
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There are 14 sheets in PDB entry 2YMN. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB, CA, CB, CC, CD, A, DB, EA, EB, FA, FB,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
93 99first strand
Strand 2
A
104 110anti-parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
313 316first strand
Strand 2
A
375 378anti-parallel
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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
93 100first strand
Strand 2
B
103 110anti-parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
313 316first strand
Strand 2
B
375 378anti-parallel
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There are 2 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
93 95first strand
Strand 2
C
108 110anti-parallel
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There are 2 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
98 100first strand
Strand 2
C
103 105anti-parallel
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There are 2 strands in CC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
313 316first strand
Strand 2
C
375 378anti-parallel
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There are 2 strands in CD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
385 386first strand
Strand 2
C
464 465anti-parallel
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There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
93 99first strand
Strand 2
D
104 110anti-parallel
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There are 2 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
313 316first strand
Strand 2
D
375 378anti-parallel
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There are 2 strands in EA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
93 99first strand
Strand 2
E
104 110anti-parallel
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There are 2 strands in EB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
313 316first strand
Strand 2
E
375 378anti-parallel
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There are 2 strands in FA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
93 99first strand
Strand 2
F
104 110anti-parallel
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There are 2 strands in FB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
313 316first strand
Strand 2
F
375 378anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il