Analysis of interatomic Contacts of Structural Units in PDB entry:
2YMS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2YMS entry

There are 4 chains in PDB entry 2YMS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 62SER 191
B
 GLY 113ASN 186
C
 ASP 229LEU 322
D
 VAL 247SER 320
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are no helices in PDB entry 2YMS

There are 9 sheets in PDB entry 2YMS. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, BB, CA, CB, A, DB,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 68first strand
Strand 2
A
71 75anti-parallel
Strand 3
A
80 85anti-parallel
Strand 4
A
91 96anti-parallel
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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
111 118first strand
Strand 2
A
121 126anti-parallel
Strand 3
A
130 135anti-parallel
Strand 4
A
141 146anti-parallel
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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
156 158first strand
Strand 2
A
161 165anti-parallel
Strand 3
A
170 175anti-parallel
Strand 4
A
181 186anti-parallel
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There are 4 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
115 118first strand
Strand 2
B
121 125anti-parallel
Strand 3
B
130 135anti-parallel
Strand 4
B
141 146anti-parallel
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There are 4 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
156 158first strand
Strand 2
B
161 165anti-parallel
Strand 3
B
171 175anti-parallel
Strand 4
B
181 185anti-parallel
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There are 4 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
233 235first strand
Strand 2
C
238 242anti-parallel
Strand 3
C
247 271anti-parallel
Strand 4
C
277 282anti-parallel
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There are 4 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
286 292first strand
Strand 2
C
295 300anti-parallel
Strand 3
C
305 309anti-parallel
Strand 4
C
315 319anti-parallel
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There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
252 254first strand
Strand 2
D
257 261anti-parallel
Strand 3
D
267 271anti-parallel
Strand 4
D
277 281anti-parallel
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There are 4 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
286 291first strand
Strand 2
D
295 300anti-parallel
Strand 3
D
305 309anti-parallel
Strand 4
D
315 319anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il