Analysis of interatomic Contacts of Structural Units in PDB entry:
2YMU

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 2YMU entry

There are 2 chains in PDB entry 2YMU (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 1	ASN 577
B	GLY 1	ASN 577

There are no helices in PDB entry 2YMU

There are 28 sheets in PDB entry 2YMU. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK, AL, AM, AN, AO, BA, BB, BC, BD, BE, BF, BG, BH, BI, BJ, BK, BL, BM,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2	4	first strand
Strand 2	B	90	94	anti-parallel
Strand 3	B	81	85	anti-parallel
Strand 4	B	71	76	anti-parallel
Strand 5	B	60	65	anti-parallel

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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	7	12	first strand
Strand 2	A	573	577	anti-parallel
Strand 3	A	564	568	anti-parallel
Strand 4	A	552	557	anti-parallel

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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	19	24	first strand
Strand 2	A	31	35	anti-parallel
Strand 3	A	39	43	anti-parallel
Strand 4	A	49	54	anti-parallel

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There are 5 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	60	65	first strand
Strand 2	A	71	76	anti-parallel
Strand 3	A	81	85	anti-parallel
Strand 4	A	90	94	anti-parallel
Strand 5	B	2	4	anti-parallel

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There are 4 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	101	106	first strand
Strand 2	A	112	117	anti-parallel
Strand 3	A	122	126	anti-parallel
Strand 4	A	131	135	anti-parallel

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There are 4 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	142	147	first strand
Strand 2	A	154	158	anti-parallel
Strand 3	A	162	166	anti-parallel
Strand 4	A	172	177	anti-parallel

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There are 4 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	183	188	first strand
Strand 2	A	195	199	anti-parallel
Strand 3	A	203	207	anti-parallel
Strand 4	A	213	218	anti-parallel

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There are 4 strands in AH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	224	229	first strand
Strand 2	A	236	240	anti-parallel
Strand 3	A	245	248	anti-parallel
Strand 4	A	254	258	anti-parallel

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There are 4 strands in AI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	265	270	first strand
Strand 2	A	276	281	anti-parallel
Strand 3	A	286	290	anti-parallel
Strand 4	A	295	299	anti-parallel

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There are 4 strands in AJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	306	311	first strand
Strand 2	A	317	322	anti-parallel
Strand 3	A	327	331	anti-parallel
Strand 4	A	336	340	anti-parallel

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There are 4 strands in AK sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	347	352	first strand
Strand 2	A	358	363	anti-parallel
Strand 3	A	367	372	anti-parallel
Strand 4	A	377	382	anti-parallel

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There are 4 strands in AL sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	388	393	first strand
Strand 2	A	400	404	anti-parallel
Strand 3	A	408	412	anti-parallel
Strand 4	A	418	423	anti-parallel

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There are 4 strands in AM sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	429	434	first strand
Strand 2	A	440	445	anti-parallel
Strand 3	A	449	454	anti-parallel
Strand 4	A	459	464	anti-parallel

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There are 4 strands in AN sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	470	475	first strand
Strand 2	A	481	486	anti-parallel
Strand 3	A	490	495	anti-parallel
Strand 4	A	500	505	anti-parallel

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There are 4 strands in AO sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	511	516	first strand
Strand 2	A	523	527	anti-parallel
Strand 3	A	531	535	anti-parallel
Strand 4	A	541	546	anti-parallel

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There are 4 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	7	12	first strand
Strand 2	B	573	577	anti-parallel
Strand 3	B	564	568	anti-parallel
Strand 4	B	552	557	anti-parallel

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There are 4 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	19	24	first strand
Strand 2	B	30	35	anti-parallel
Strand 3	B	39	44	anti-parallel
Strand 4	B	49	54	anti-parallel

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There are 4 strands in BC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	101	106	first strand
Strand 2	B	112	117	anti-parallel
Strand 3	B	122	126	anti-parallel
Strand 4	B	131	135	anti-parallel

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There are 4 strands in BD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	142	147	first strand
Strand 2	B	154	158	anti-parallel
Strand 3	B	162	166	anti-parallel
Strand 4	B	172	177	anti-parallel

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There are 4 strands in BE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	183	188	first strand
Strand 2	B	195	199	anti-parallel
Strand 3	B	204	207	anti-parallel
Strand 4	B	213	217	anti-parallel

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There are 4 strands in BF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	224	229	first strand
Strand 2	B	236	240	anti-parallel
Strand 3	B	245	248	anti-parallel
Strand 4	B	254	258	anti-parallel

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There are 4 strands in BG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	265	270	first strand
Strand 2	B	276	281	anti-parallel
Strand 3	B	286	290	anti-parallel
Strand 4	B	295	299	anti-parallel

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There are 4 strands in BH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	306	311	first strand
Strand 2	B	317	322	anti-parallel
Strand 3	B	326	331	anti-parallel
Strand 4	B	336	341	anti-parallel

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There are 4 strands in BI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	347	352	first strand
Strand 2	B	358	363	anti-parallel
Strand 3	B	367	372	anti-parallel
Strand 4	B	377	382	anti-parallel

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There are 4 strands in BJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	388	393	first strand
Strand 2	B	399	404	anti-parallel
Strand 3	B	409	413	anti-parallel
Strand 4	B	418	422	anti-parallel

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There are 4 strands in BK sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	429	434	first strand
Strand 2	B	441	445	anti-parallel
Strand 3	B	450	453	anti-parallel
Strand 4	B	459	463	anti-parallel

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There are 4 strands in BL sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	470	475	first strand
Strand 2	B	481	486	anti-parallel
Strand 3	B	491	495	anti-parallel
Strand 4	B	500	504	anti-parallel

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There are 4 strands in BM sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	511	516	first strand
Strand 2	B	523	527	anti-parallel
Strand 3	B	532	535	anti-parallel
Strand 4	B	541	545	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 2YMU

Analysis of interatomic Contacts of Structural Units in PDB entry:
2YMU