Analysis of interatomic Contacts of Structural Units in PDB entry:
2YMV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2YMV entry

There is 1 chain in PDB entry 2YMV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 3ARG 329
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 2YMV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
8 20Right-handed alpha
Helix 2
2
A
24 28Right-handed 310
Helix 3
3
A
46 49Right-handed 310
Helix 4
4
A
54 56Right-handed 310
Helix 5
5
A
57 78Right-handed alpha
Helix 6
6
A
108 121Right-handed alpha
Helix 7
7
A
133 146Right-handed alpha
Helix 8
8
A
156 158Right-handed 310
Helix 9
9
A
159 174Right-handed alpha
Helix 10
10
A
177 187Right-handed alpha
Helix 11
11
A
198 202Right-handed 310
Helix 12
12
A
204 209Right-handed alpha
Helix 13
13
A
245 266Right-handed alpha
Helix 14
14
A
274 278Right-handed 310
Helix 15
15
A
279 288Right-handed alpha
Helix 16
16
A
319 323Right-handed alpha
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There are 2 sheets in PDB entry 2YMV. Click on sheet of interest to get list of strands forming it: AA, AB,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
80 86first strand
Strand 2
A
95 103anti-parallel
Strand 3
A
39 44anti-parallel
Strand 4
A
31 36anti-parallel
Strand 5
A
324 326parallel
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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
151 154first strand
Strand 2
A
235 241anti-parallel
Strand 3
A
295 303anti-parallel
Strand 4
A
269 273anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il