Analysis of interatomic Contacts of Structural Units in PDB entry:
2YMW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 2YMW entry

There are 4 chains in PDB entry 2YMW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 2	TRP 580
A	PRO 582	GLU 686
B	ALA 2	TRP 580
B	PRO 582	GLU 686

There are 45 helices in PDB entry 2YMW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	92	96	Right-handed 310
Helix 2	2	A	105	109	Right-handed 310
Helix 3	3	A	109	112	Right-handed 310
Helix 4	4	A	113	118	Right-handed alpha
Helix 5	5	A	128	134	Right-handed alpha
Helix 6	6	A	260	274	Right-handed alpha
Helix 7	7	A	295	307	Right-handed alpha
Helix 8	8	A	315	322	Right-handed 310
Helix 9	9	A	332	334	Right-handed 310
Helix 10	10	A	335	344	Right-handed alpha
Helix 11	11	A	359	363	Right-handed 310
Helix 12	12	A	406	419	Right-handed alpha
Helix 13	13	A	432	440	Right-handed alpha
Helix 14	14	A	459	461	Right-handed 310
Helix 15	15	A	474	482	Right-handed alpha
Helix 16	16	A	509	515	Right-handed alpha
Helix 17	17	A	595	603	Right-handed alpha
Helix 18	18	A	618	626	Right-handed alpha
Helix 19	19	A	627	629	Right-handed 310
Helix 20	20	A	651	653	Right-handed 310
Helix 21	21	A	662	667	Right-handed alpha
Helix 22	22	A	668	673	Right-handed 310
Helix 23	23	B	92	96	Right-handed 310
Helix 24	24	B	109	112	Right-handed 310
Helix 25	25	B	113	118	Right-handed alpha
Helix 26	26	B	128	133	Right-handed alpha
Helix 27	27	B	261	273	Right-handed alpha
Helix 28	28	B	295	308	Right-handed alpha
Helix 29	29	B	309	312	Right-handed 310
Helix 30	30	B	315	322	Right-handed 310
Helix 31	31	B	335	345	Right-handed alpha
Helix 32	32	B	359	363	Right-handed 310
Helix 33	33	B	406	419	Right-handed alpha
Helix 34	34	B	432	440	Right-handed alpha
Helix 35	35	B	454	458	Right-handed 310
Helix 36	36	B	459	461	Right-handed 310
Helix 37	37	B	474	479	Right-handed alpha
Helix 38	38	B	488	493	Right-handed alpha
Helix 39	39	B	509	515	Right-handed alpha
Helix 40	40	B	581	585	Right-handed 310
Helix 41	41	B	595	603	Right-handed alpha
Helix 42	42	B	618	626	Right-handed alpha
Helix 43	43	B	627	629	Right-handed 310
Helix 44	44	B	662	667	Right-handed alpha
Helix 45	45	B	668	673	Right-handed 310

There are 37 sheets in PDB entry 2YMW. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK, AL, AM, AN, AO, AP, AQ, AR, AS, BA, BB, BC, BD, BE, BF, BG, BH, BI, BJ, BK, BL, BM, BN, BO, BP, BQ, BR,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4	6	first strand
Strand 2	A	58	67	anti-parallel

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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	22	24	first strand
Strand 2	A	58	67	anti-parallel

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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	71	73	first strand
Strand 2	A	58	67	anti-parallel

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There are 5 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	150	154	first strand
Strand 2	A	181	187	anti-parallel
Strand 3	A	193	196	anti-parallel
Strand 4	A	58	67	anti-parallel
Strand 5	A	71	73	anti-parallel

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There are 5 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	150	154	first strand
Strand 2	A	181	187	anti-parallel
Strand 3	A	193	196	anti-parallel
Strand 4	A	58	67	anti-parallel
Strand 5	A	22	24	anti-parallel

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There are 5 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	9	13	first strand
Strand 2	A	239	247	parallel
Strand 3	A	223	232	anti-parallel
Strand 4	A	80	91	anti-parallel
Strand 5	A	137	138	anti-parallel

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There are 5 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	9	13	first strand
Strand 2	A	239	247	parallel
Strand 3	A	223	232	anti-parallel
Strand 4	A	80	91	anti-parallel
Strand 5	A	142	145	anti-parallel

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There are 2 strands in AH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	137	138	first strand
Strand 2	A	80	91	anti-parallel

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There are 2 strands in AI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	34	36	first strand
Strand 2	A	42	45	anti-parallel

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There are 3 strands in AJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	174	175	first strand
Strand 2	A	202	204	anti-parallel
Strand 3	A	217	219	anti-parallel

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There are 2 strands in AK sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	280	281	first strand
Strand 2	A	286	287	anti-parallel

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There are 2 strands in AL sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	293	294	first strand
Strand 2	A	421	422	parallel

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There are 2 strands in AM sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	381	384	first strand
Strand 2	A	400	402	anti-parallel

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There are 2 strands in AN sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	463	465	first strand
Strand 2	A	468	469	anti-parallel

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There are 2 strands in AO sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	518	522	first strand
Strand 2	A	575	579	anti-parallel

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There are 2 strands in AP sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	530	543	first strand
Strand 2	A	557	571	anti-parallel

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There are 2 strands in AQ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	588	590	first strand
Strand 2	A	609	611	anti-parallel

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There are 2 strands in AR sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	631	634	first strand
Strand 2	A	645	648	anti-parallel

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There are 2 strands in AS sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	655	661	first strand
Strand 2	A	675	681	anti-parallel

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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	6	first strand
Strand 2	B	58	66	anti-parallel

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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	22	24	first strand
Strand 2	B	58	66	parallel

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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	72	73	first strand
Strand 2	B	58	66	anti-parallel

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There are 5 strands in BD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	150	154	first strand
Strand 2	B	181	187	anti-parallel
Strand 3	B	193	196	anti-parallel
Strand 4	B	58	66	anti-parallel
Strand 5	B	72	73	anti-parallel

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There are 5 strands in BE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	150	154	first strand
Strand 2	B	181	187	anti-parallel
Strand 3	B	193	196	anti-parallel
Strand 4	B	58	66	anti-parallel
Strand 5	B	22	24	parallel

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There are 5 strands in BF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	9	13	first strand
Strand 2	B	237	247	parallel
Strand 3	B	223	232	anti-parallel
Strand 4	B	80	90	anti-parallel
Strand 5	B	142	145	anti-parallel

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There are 2 strands in BG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	34	36	first strand
Strand 2	B	42	45	anti-parallel

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There are 3 strands in BH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	174	175	first strand
Strand 2	B	202	204	anti-parallel
Strand 3	B	217	219	anti-parallel

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There are 2 strands in BI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	259	260	first strand
Strand 2	B	443	445	anti-parallel

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There are 2 strands in BJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	280	281	first strand
Strand 2	B	286	287	anti-parallel

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There are 2 strands in BK sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	293	294	first strand
Strand 2	B	421	422	parallel

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There are 2 strands in BL sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	381	384	first strand
Strand 2	B	400	402	anti-parallel

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There are 2 strands in BM sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	463	465	first strand
Strand 2	B	468	469	anti-parallel

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There are 2 strands in BN sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	518	522	first strand
Strand 2	B	575	579	anti-parallel

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There are 2 strands in BO sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	530	543	first strand
Strand 2	B	557	571	anti-parallel

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There are 2 strands in BP sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	588	590	first strand
Strand 2	B	609	611	anti-parallel

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There are 2 strands in BQ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	631	634	first strand
Strand 2	B	645	648	anti-parallel

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There are 2 strands in BR sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	656	661	first strand
Strand 2	B	675	680	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 2YMW

Analysis of interatomic Contacts of Structural Units in PDB entry:
2YMW