Analysis of interatomic Contacts of Structural Units in PDB entry:
2YN6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2YN6 entry

There are 5 chains in PDB entry 2YN6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 11ILE 317
B
 PRO 11ILE 317
C
 PRO 11ILE 317
D
 PRO 11ILE 317
E
 PRO 11ILE 317
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 2YN6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
59 69Right-handed alpha
Helix 2
2
A
201 208Right-handed alpha
Helix 3
3
A
208 220Right-handed alpha
Helix 4
4
A
221 225Right-handed 310
Helix 5
5
A
227 253Right-handed alpha
Helix 6
6
A
260 286Right-handed alpha
Helix 7
7
A
294 299Right-handed alpha
Helix 8
8
A
302 317Right-handed alpha
Helix 9
9
B
59 69Right-handed alpha
Helix 10
10
B
201 208Right-handed alpha
Helix 11
11
B
208 220Right-handed alpha
Helix 12
12
B
221 225Right-handed 310
Helix 13
13
B
227 253Right-handed alpha
Helix 14
14
B
260 286Right-handed alpha
Helix 15
15
B
294 299Right-handed alpha
Helix 16
16
B
302 317Right-handed alpha
Helix 17
17
C
59 69Right-handed alpha
Helix 18
18
C
201 208Right-handed alpha
Helix 19
19
C
208 220Right-handed alpha
Helix 20
20
C
221 225Right-handed 310
Helix 21
21
C
227 253Right-handed alpha
Helix 22
22
C
260 286Right-handed alpha
Helix 23
23
C
294 299Right-handed alpha
Helix 24
24
C
302 317Right-handed alpha
Helix 25
25
D
59 69Right-handed alpha
Helix 26
26
D
201 208Right-handed alpha
Helix 27
27
D
208 220Right-handed alpha
Helix 28
28
D
221 225Right-handed 310
Helix 29
29
D
227 253Right-handed alpha
Helix 30
30
D
260 286Right-handed alpha
Helix 31
31
D
294 299Right-handed alpha
Helix 32
32
D
302 317Right-handed alpha
Helix 33
33
E
59 69Right-handed alpha
Helix 34
34
E
201 208Right-handed alpha
Helix 35
35
E
208 220Right-handed alpha
Helix 36
36
E
221 225Right-handed 310
Helix 37
37
E
227 253Right-handed alpha
Helix 38
38
E
260 286Right-handed alpha
Helix 39
39
E
294 299Right-handed alpha
Helix 40
40
E
302 317Right-handed alpha
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There are 20 sheets in PDB entry 2YN6. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, BA, BB, BC, BD, CA, CB, CC, CD, A, DB, C, DD, EA, EB, EC, ED,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 58first strand
Strand 2
A
81 94anti-parallel
Strand 3
A
99 111anti-parallel
Strand 4
A
32 44anti-parallel
Strand 5
A
13 27anti-parallel
Strand 6
A
139 146parallel
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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
76 78first strand
Strand 2
A
123 132anti-parallel
Strand 3
A
187 199anti-parallel
Strand 4
A
168 174anti-parallel
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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
76 78first strand
Strand 2
A
123 132anti-parallel
Strand 3
A
187 199anti-parallel
Strand 4
A
160 162anti-parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
168 174first strand
Strand 2
A
187 199anti-parallel
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There are 6 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
56 58first strand
Strand 2
B
81 94anti-parallel
Strand 3
B
99 111anti-parallel
Strand 4
B
32 44anti-parallel
Strand 5
B
13 27anti-parallel
Strand 6
B
139 146parallel
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There are 4 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
76 78first strand
Strand 2
B
123 132anti-parallel
Strand 3
B
187 199anti-parallel
Strand 4
B
168 174anti-parallel
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There are 4 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
76 78first strand
Strand 2
B
123 132anti-parallel
Strand 3
B
187 199anti-parallel
Strand 4
B
160 162anti-parallel
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There are 2 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
168 174first strand
Strand 2
B
187 199anti-parallel
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There are 6 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
56 58first strand
Strand 2
C
81 94anti-parallel
Strand 3
C
99 111anti-parallel
Strand 4
C
32 44anti-parallel
Strand 5
C
13 27anti-parallel
Strand 6
C
139 146parallel
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There are 4 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
76 78first strand
Strand 2
C
123 132anti-parallel
Strand 3
C
187 199anti-parallel
Strand 4
C
168 174anti-parallel
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There are 4 strands in CC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
76 78first strand
Strand 2
C
123 132anti-parallel
Strand 3
C
187 199anti-parallel
Strand 4
C
160 162anti-parallel
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There are 2 strands in CD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
168 174first strand
Strand 2
C
187 199anti-parallel
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There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
56 58first strand
Strand 2
D
81 94anti-parallel
Strand 3
D
99 111anti-parallel
Strand 4
D
32 44anti-parallel
Strand 5
D
13 27anti-parallel
Strand 6
D
139 146parallel
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There are 4 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
76 78first strand
Strand 2
D
123 132anti-parallel
Strand 3
D
187 199anti-parallel
Strand 4
D
168 174anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
76 78first strand
Strand 2
D
123 132anti-parallel
Strand 3
D
187 199anti-parallel
Strand 4
D
160 162anti-parallel
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There are 2 strands in DD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
168 174first strand
Strand 2
D
187 199anti-parallel
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There are 6 strands in EA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
56 58first strand
Strand 2
E
81 94anti-parallel
Strand 3
E
99 111anti-parallel
Strand 4
E
32 44anti-parallel
Strand 5
E
13 27anti-parallel
Strand 6
E
139 146parallel
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There are 4 strands in EB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
76 78first strand
Strand 2
E
123 132anti-parallel
Strand 3
E
187 199anti-parallel
Strand 4
E
168 174anti-parallel
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There are 4 strands in EC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
76 78first strand
Strand 2
E
123 132anti-parallel
Strand 3
E
187 199anti-parallel
Strand 4
E
160 162anti-parallel
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There are 2 strands in ED sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
168 174first strand
Strand 2
E
187 199anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il