Analysis of interatomic Contacts of Structural Units in PDB entry:
2YN8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2YN8 entry

There are 2 chains in PDB entry 2YN8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 608ALA 888
B
 PHE 606ALA 888
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 2YN8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
611 613Right-handed 310
Helix 2
2
A
654 670Right-handed alpha
Helix 3
3
A
701 708Right-handed alpha
Helix 4
4
A
713 734Right-handed alpha
Helix 5
5
A
742 744Right-handed 310
Helix 6
6
A
783 787Right-handed 310
Helix 7
7
A
788 795Right-handed alpha
Helix 8
8
A
798 815Right-handed alpha
Helix 9
9
A
825 835Right-handed alpha
Helix 10
10
A
846 857Right-handed alpha
Helix 11
11
A
860 864Right-handed 310
Helix 12
12
A
866 880Right-handed alpha
Helix 13
13
A
881 886Right-handed 310
Helix 14
14
B
611 613Right-handed 310
Helix 15
15
B
654 670Right-handed alpha
Helix 16
16
B
701 708Right-handed alpha
Helix 17
17
B
713 734Right-handed alpha
Helix 18
18
B
742 744Right-handed 310
Helix 19
19
B
783 787Right-handed 310
Helix 20
20
B
788 795Right-handed alpha
Helix 21
21
B
798 815Right-handed alpha
Helix 22
22
B
825 835Right-handed alpha
Helix 23
23
B
846 857Right-handed alpha
Helix 24
24
B
860 864Right-handed 310
Helix 25
25
B
866 880Right-handed alpha
Helix 26
26
B
881 886Right-handed 310
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There are 4 sheets in PDB entry 2YN8. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
615 623first strand
Strand 2
A
628 634anti-parallel
Strand 3
A
642 649anti-parallel
Strand 4
A
689 694anti-parallel
Strand 5
A
679 683anti-parallel
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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
699 700first strand
Strand 2
A
746 748anti-parallel
Strand 3
A
754 756anti-parallel
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There are 5 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
615 623first strand
Strand 2
B
628 634anti-parallel
Strand 3
B
642 649anti-parallel
Strand 4
B
689 694anti-parallel
Strand 5
B
679 683anti-parallel
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There are 3 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
699 700first strand
Strand 2
B
746 748anti-parallel
Strand 3
B
754 756anti-parallel
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