Analysis of interatomic Contacts of Structural Units in PDB entry:
2YNK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2YNK entry

There is 1 chain in PDB entry 2YNK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 24LEU 477
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 5 helices in PDB entry 2YNK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
30 43Right-handed alpha
Helix 2
2
A
57 66Right-handed alpha
Helix 3
3
A
71 89Right-handed alpha
Helix 4
4
A
207 214Right-handed 310
Helix 5
5
A
300 305Right-handed alpha
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There are 4 sheets in PDB entry 2YNK. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 27first strand
Strand 2
A
55 56anti-parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 53first strand
Strand 2
A
174 175anti-parallel
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There are 19 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 99first strand
Strand 2
A
465 475anti-parallel
Strand 3
A
446 456anti-parallel
Strand 4
A
429 443anti-parallel
Strand 5
A
404 414anti-parallel
Strand 6
A
389 398anti-parallel
Strand 7
A
343 352anti-parallel
Strand 8
A
323 338anti-parallel
Strand 9
A
308 320anti-parallel
Strand 10
A
289 299anti-parallel
Strand 11
A
249 259anti-parallel
Strand 12
A
235 246anti-parallel
Strand 13
A
216 224anti-parallel
Strand 14
A
193 199anti-parallel
Strand 15
A
164 170anti-parallel
Strand 16
A
156 161anti-parallel
Strand 17
A
130 142parallel
Strand 18
A
115 127anti-parallel
Strand 19
A
92 99first strand
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
374 375first strand
Strand 2
A
378 379anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il