Analysis of interatomic Contacts of Structural Units in PDB entry:
2YNM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2YNM entry

There are 4 chains in PDB entry 2YNM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 29PHE 295
B
 GLY 28PHE 295
C
 LEU -5ASN 411
D
 MET 1LEU 349
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 78 helices in PDB entry 2YNM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
41 56Right-handed alpha
Helix 2
2
A
72 77Right-handed alpha
Helix 3
3
A
82 90Right-handed alpha
Helix 4
4
A
93 97Right-handed 310
Helix 5
5
A
98 103Right-handed alpha
Helix 6
6
A
107 109Right-handed 310
Helix 7
7
A
124 139Right-handed alpha
Helix 8
8
A
159 167Right-handed 310
Helix 9
9
A
178 196Right-handed alpha
Helix 10
10
A
214 225Right-handed alpha
Helix 11
11
A
235 244Right-handed alpha
Helix 12
12
A
247 251Right-handed 310
Helix 13
13
A
257 275Right-handed alpha
Helix 14
14
A
285 293Right-handed alpha
Helix 15
15
B
41 56Right-handed alpha
Helix 16
16
B
72 77Right-handed alpha
Helix 17
17
B
82 90Right-handed alpha
Helix 18
18
B
93 97Right-handed 310
Helix 19
19
B
98 102Right-handed 310
Helix 20
20
B
107 109Right-handed 310
Helix 21
21
B
124 139Right-handed alpha
Helix 22
22
B
159 167Right-handed 310
Helix 23
23
B
178 197Right-handed alpha
Helix 24
24
B
214 225Right-handed alpha
Helix 25
25
B
235 244Right-handed alpha
Helix 26
26
B
247 251Right-handed 310
Helix 27
27
B
257 275Right-handed alpha
Helix 28
28
B
285 293Right-handed alpha
Helix 29
29
C
18 20Right-handed 310
Helix 30
30
C
21 29Right-handed alpha
Helix 31
31
C
39 51Right-handed alpha
Helix 32
32
C
66 71Right-handed alpha
Helix 33
33
C
75 91Right-handed alpha
Helix 34
34
C
102 108Right-handed alpha
Helix 35
35
C
111 124Right-handed alpha
Helix 36
36
C
142 153Right-handed alpha
Helix 37
37
C
154 156Right-handed 310
Helix 38
38
C
171 185Right-handed alpha
Helix 39
39
C
217 227Right-handed alpha
Helix 40
40
C
238 254Right-handed alpha
Helix 41
41
C
257 284Right-handed alpha
Helix 42
42
C
296 307Right-handed alpha
Helix 43
43
C
325 332Right-handed alpha
Helix 44
44
C
343 355Right-handed alpha
Helix 45
45
C
365 372Right-handed alpha
Helix 46
46
C
380 385Right-handed 310
Helix 47
47
C
389 391Right-handed 310
Helix 48
48
C
392 411Right-handed alpha
Helix 49
49
D
11 23Right-handed alpha
Helix 50
50
D
35 38Right-handed 310
Helix 51
51
D
39 45Right-handed alpha
Helix 52
52
D
61 67Right-handed 310
Helix 53
53
D
68 85Right-handed alpha
Helix 54
54
D
94 101Right-handed alpha
Helix 55
55
D
103 109Right-handed alpha
Helix 56
56
D
128 146Right-handed alpha
Helix 57
57
D
158 164Right-handed alpha
Helix 58
58
D
180 195Right-handed alpha
Helix 59
59
D
208 213Right-handed alpha
Helix 60
60
D
214 218Right-handed 310
Helix 61
61
D
225 241Right-handed alpha
Helix 62
62
D
251 267Right-handed alpha
Helix 63
63
D
276 280Right-handed 310
Helix 64
64
D
281 288Right-handed alpha
Helix 65
65
D
289 295Right-handed 310
Helix 66
66
D
304 318Right-handed alpha
Helix 67
67
D
330 332Right-handed 310
Helix 68
68
D
333 344Right-handed alpha
Helix 69
69
D
353 365Right-handed alpha
Helix 70
70
D
372 383Right-handed alpha
Helix 71
71
D
394 398Right-handed 310
Helix 72
72
D
406 420Right-handed alpha
Helix 73
73
D
424 434Right-handed alpha
Helix 74
74
D
445 449Right-handed 310
Helix 75
75
D
482 491Right-handed alpha
Helix 76
76
D
493 495Right-handed 310
Helix 77
77
D
496 511Right-handed alpha
Helix 78
78
D
517 528Right-handed alpha
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There are 8 sheets in PDB entry 2YNM. Click on sheet of interest to get list of strands forming it: AA, BA, CA, CB, CC, A, DB, C,

There are 8 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
104 105first strand
Strand 2
A
111 114anti-parallel
Strand 3
A
60 65parallel
Strand 4
A
147 152parallel
Strand 5
A
30 36parallel
Strand 6
A
170 175parallel
Strand 7
A
202 209parallel
Strand 8
A
228 232parallel
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There are 8 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
104 105first strand
Strand 2
B
111 114anti-parallel
Strand 3
B
60 65parallel
Strand 4
B
147 152parallel
Strand 5
B
30 36parallel
Strand 6
B
170 175parallel
Strand 7
B
202 208parallel
Strand 8
B
228 231parallel
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There are 7 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
-1 1first strand
Strand 2
C
4 9anti-parallel
Strand 3
C
337 341parallel
Strand 4
C
311 317parallel
Strand 5
C
287 290parallel
Strand 6
C
358 361parallel
Strand 7
C
376 378parallel
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There are 5 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
128 133first strand
Strand 2
C
96 101parallel
Strand 3
C
32 38parallel
Strand 4
C
60 64parallel
Strand 5
D
2 4anti-parallel
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There are 4 strands in CC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
190 193first strand
Strand 2
C
163 167parallel
Strand 3
C
208 212parallel
Strand 4
C
230 231parallel
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There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
55 57first strand
Strand 2
D
26 31parallel
Strand 3
D
88 93parallel
Strand 4
D
117 119parallel
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There are 4 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
198 203first strand
Strand 2
D
168 172parallel
Strand 3
D
220 223parallel
Strand 4
D
244 245parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
349 350first strand
Strand 2
D
322 328parallel
Strand 3
D
298 301parallel
Strand 4
D
368 371parallel
Strand 5
D
386 388parallel
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