Analysis of interatomic Contacts of Structural Units in PDB entry:
2YOO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2YOO entry

There are 4 chains in PDB entry 2YOO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 5LEU 400
B
 THR 6LEU 400
C
 THR 6LEU 400
D
 THR 6VAL 399
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 86 helices in PDB entry 2YOO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
14 20Right-handed alpha
Helix 2
2
A
22 34Right-handed alpha
Helix 3
3
A
48 58Right-handed alpha
Helix 4
4
A
77 81Right-handed 310
Helix 5
5
A
84 94Right-handed alpha
Helix 6
6
A
95 97Right-handed 310
Helix 7
7
A
98 104Right-handed alpha
Helix 8
8
A
105 122Right-handed alpha
Helix 9
9
A
128 132Right-handed alpha
Helix 10
10
A
134 146Right-handed alpha
Helix 11
11
A
148 150Right-handed 310
Helix 12
12
A
151 164Right-handed alpha
Helix 13
13
A
171 199Right-handed alpha
Helix 14
14
A
203 210Right-handed alpha
Helix 15
15
A
219 236Right-handed alpha
Helix 16
16
A
237 252Right-handed alpha
Helix 17
17
A
252 262Right-handed alpha
Helix 18
18
A
265 278Right-handed alpha
Helix 19
19
A
308 312Right-handed alpha
Helix 20
20
A
314 319Right-handed alpha
Helix 21
21
A
338 342Right-handed 310
Helix 22
22
A
345 364Right-handed alpha
Helix 23
23
B
14 19Right-handed 310
Helix 24
24
B
22 34Right-handed alpha
Helix 25
25
B
48 58Right-handed alpha
Helix 26
26
B
77 81Right-handed 310
Helix 27
27
B
84 94Right-handed alpha
Helix 28
28
B
95 97Right-handed 310
Helix 29
29
B
98 104Right-handed alpha
Helix 30
30
B
105 121Right-handed alpha
Helix 31
31
B
128 132Right-handed alpha
Helix 32
32
B
134 146Right-handed alpha
Helix 33
33
B
148 150Right-handed 310
Helix 34
34
B
151 165Right-handed alpha
Helix 35
35
B
171 199Right-handed alpha
Helix 36
36
B
203 210Right-handed alpha
Helix 37
37
B
219 236Right-handed alpha
Helix 38
38
B
237 252Right-handed alpha
Helix 39
39
B
252 262Right-handed alpha
Helix 40
40
B
265 278Right-handed alpha
Helix 41
41
B
308 312Right-handed alpha
Helix 42
42
B
314 319Right-handed alpha
Helix 43
43
B
338 342Right-handed 310
Helix 44
44
B
345 364Right-handed alpha
Helix 45
45
C
14 19Right-handed 310
Helix 46
46
C
22 34Right-handed alpha
Helix 47
47
C
48 57Right-handed alpha
Helix 48
48
C
77 81Right-handed 310
Helix 49
49
C
84 94Right-handed alpha
Helix 50
50
C
95 97Right-handed 310
Helix 51
51
C
98 104Right-handed alpha
Helix 52
52
C
105 119Right-handed alpha
Helix 53
53
C
128 132Right-handed alpha
Helix 54
54
C
134 146Right-handed alpha
Helix 55
55
C
148 150Right-handed 310
Helix 56
56
C
151 164Right-handed alpha
Helix 57
57
C
171 199Right-handed alpha
Helix 58
58
C
203 210Right-handed alpha
Helix 59
59
C
219 236Right-handed alpha
Helix 60
60
C
237 252Right-handed alpha
Helix 61
61
C
252 262Right-handed alpha
Helix 62
62
C
265 278Right-handed alpha
Helix 63
63
C
307 313Right-handed alpha
Helix 64
64
C
314 319Right-handed alpha
Helix 65
65
C
345 364Right-handed alpha
Helix 66
66
D
14 20Right-handed alpha
Helix 67
67
D
22 34Right-handed alpha
Helix 68
68
D
48 57Right-handed alpha
Helix 69
69
D
77 81Right-handed 310
Helix 70
70
D
84 94Right-handed alpha
Helix 71
71
D
95 97Right-handed 310
Helix 72
72
D
98 104Right-handed alpha
Helix 73
73
D
105 121Right-handed alpha
Helix 74
74
D
128 132Right-handed alpha
Helix 75
75
D
134 146Right-handed alpha
Helix 76
76
D
148 150Right-handed 310
Helix 77
77
D
151 164Right-handed alpha
Helix 78
78
D
171 199Right-handed alpha
Helix 79
79
D
203 210Right-handed alpha
Helix 80
80
D
219 236Right-handed alpha
Helix 81
81
D
237 252Right-handed alpha
Helix 82
82
D
252 262Right-handed alpha
Helix 83
83
D
265 278Right-handed alpha
Helix 84
84
D
308 313Right-handed alpha
Helix 85
85
D
314 319Right-handed alpha
Helix 86
86
D
345 364Right-handed alpha
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There are 16 sheets in PDB entry 2YOO. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, BA, BB, BC, BD, CA, CB, CC, CD, A, DB, C, DD,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
36 38first strand
Strand 2
A
44 46anti-parallel
Strand 3
A
303 307parallel
Strand 4
A
282 287anti-parallel
Strand 5
A
62 63anti-parallel
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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
125 127first strand
Strand 2
A
390 392anti-parallel
Strand 3
A
368 369anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
212 213first strand
Strand 2
A
216 217anti-parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
291 293first strand
Strand 2
A
296 298anti-parallel
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There are 5 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
36 38first strand
Strand 2
B
44 46anti-parallel
Strand 3
B
303 307parallel
Strand 4
B
282 287anti-parallel
Strand 5
B
62 63anti-parallel
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There are 3 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
125 127first strand
Strand 2
B
390 392anti-parallel
Strand 3
B
368 369anti-parallel
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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
212 213first strand
Strand 2
B
216 217anti-parallel
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There are 2 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
291 293first strand
Strand 2
B
296 298anti-parallel
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There are 5 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
36 38first strand
Strand 2
C
44 46anti-parallel
Strand 3
C
303 306parallel
Strand 4
C
283 287anti-parallel
Strand 5
C
62 63anti-parallel
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There are 3 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
125 127first strand
Strand 2
C
390 392anti-parallel
Strand 3
C
368 369anti-parallel
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There are 2 strands in CC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
212 213first strand
Strand 2
C
216 217anti-parallel
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There are 2 strands in CD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
291 293first strand
Strand 2
C
296 298anti-parallel
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There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
36 38first strand
Strand 2
D
44 46anti-parallel
Strand 3
D
303 307parallel
Strand 4
D
282 287anti-parallel
Strand 5
D
62 63anti-parallel
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There are 3 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
125 127first strand
Strand 2
D
390 392anti-parallel
Strand 3
D
368 369anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
212 213first strand
Strand 2
D
216 217anti-parallel
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There are 2 strands in DD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
291 293first strand
Strand 2
D
296 298anti-parallel
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