Analysis of interatomic Contacts of Structural Units in PDB entry:
2YP1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2YP1 entry

There are 4 chains in PDB entry 2YP1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 4GLY 326
B
 LEU 4ARG 327
C
 LEU 4ASP 328
D
 LEU 4GLY 326
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 55 helices in PDB entry 2YP1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
36 44Right-handed alpha
Helix 2
2
A
55 68Right-handed alpha
Helix 3
3
A
70 86Right-handed alpha
Helix 4
4
A
99 103Right-handed 310
Helix 5
5
A
131 135Right-handed 310
Helix 6
6
A
141 156Right-handed alpha
Helix 7
7
A
161 180Right-handed alpha
Helix 8
8
A
186 196Right-handed alpha
Helix 9
9
A
198 204Right-handed alpha
Helix 10
10
A
215 226Right-handed alpha
Helix 11
11
A
243 251Right-handed alpha
Helix 12
12
A
276 287Right-handed alpha
Helix 13
13
A
287 293Right-handed alpha
Helix 14
14
A
297 314Right-handed alpha
Helix 15
15
B
36 45Right-handed alpha
Helix 16
16
B
55 68Right-handed alpha
Helix 17
17
B
70 86Right-handed alpha
Helix 18
18
B
99 103Right-handed 310
Helix 19
19
B
131 135Right-handed 310
Helix 20
20
B
141 156Right-handed alpha
Helix 21
21
B
161 180Right-handed alpha
Helix 22
22
B
186 204Right-handed alpha
Helix 23
23
B
215 226Right-handed alpha
Helix 24
24
B
243 251Right-handed alpha
Helix 25
25
B
276 287Right-handed alpha
Helix 26
26
B
287 293Right-handed alpha
Helix 27
27
B
297 314Right-handed alpha
Helix 28
28
C
36 45Right-handed alpha
Helix 29
29
C
55 68Right-handed alpha
Helix 30
30
C
70 86Right-handed alpha
Helix 31
31
C
99 103Right-handed 310
Helix 32
32
C
131 135Right-handed 310
Helix 33
33
C
141 156Right-handed alpha
Helix 34
34
C
161 180Right-handed alpha
Helix 35
35
C
186 197Right-handed alpha
Helix 36
36
C
198 204Right-handed alpha
Helix 37
37
C
215 226Right-handed alpha
Helix 38
38
C
243 251Right-handed alpha
Helix 39
39
C
276 287Right-handed alpha
Helix 40
40
C
287 293Right-handed alpha
Helix 41
41
C
297 314Right-handed alpha
Helix 42
42
D
36 45Right-handed alpha
Helix 43
43
D
55 68Right-handed alpha
Helix 44
44
D
70 86Right-handed alpha
Helix 45
45
D
99 103Right-handed 310
Helix 46
46
D
131 135Right-handed 310
Helix 47
47
D
141 156Right-handed alpha
Helix 48
48
D
161 180Right-handed alpha
Helix 49
49
D
186 196Right-handed alpha
Helix 50
50
D
198 204Right-handed alpha
Helix 51
51
D
215 224Right-handed alpha
Helix 52
52
D
243 251Right-handed alpha
Helix 53
53
D
276 287Right-handed alpha
Helix 54
54
D
287 293Right-handed alpha
Helix 55
55
D
297 314Right-handed alpha
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There are 8 sheets in PDB entry 2YP1. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB, CA, CB, A, DB,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 54first strand
Strand 2
A
93 94anti-parallel
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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
184 185first strand
Strand 2
A
256 257anti-parallel
Strand 3
A
266 267anti-parallel
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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
53 54first strand
Strand 2
B
93 94anti-parallel
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There are 3 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
184 185first strand
Strand 2
B
256 257anti-parallel
Strand 3
B
266 267anti-parallel
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There are 2 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
53 54first strand
Strand 2
C
93 94anti-parallel
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There are 3 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
184 185first strand
Strand 2
C
256 257anti-parallel
Strand 3
C
266 267anti-parallel
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There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
53 54first strand
Strand 2
D
93 94anti-parallel
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There are 3 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
184 185first strand
Strand 2
D
256 257anti-parallel
Strand 3
D
266 267anti-parallel
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