Analysis of interatomic Contacts of Structural Units in PDB entry:
2YPU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2YPU entry

There are 2 chains in PDB entry 2YPU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 43HIS 1011
B
 ASN 43HIS 1011
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 86 helices in PDB entry 2YPU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
95 99Right-handed 310
Helix 2
2
A
105 114Right-handed alpha
Helix 3
3
A
115 117Right-handed 310
Helix 4
4
A
125 133Right-handed alpha
Helix 5
5
A
157 168Right-handed alpha
Helix 6
6
A
175 194Right-handed alpha
Helix 7
7
A
196 208Right-handed alpha
Helix 8
8
A
213 217Right-handed 310
Helix 9
9
A
222 227Right-handed alpha
Helix 10
10
A
227 233Right-handed alpha
Helix 11
11
A
236 249Right-handed alpha
Helix 12
12
A
250 252Right-handed 310
Helix 13
13
A
263 276Right-handed alpha
Helix 14
14
A
294 298Right-handed 310
Helix 15
15
A
322 326Right-handed 310
Helix 16
16
A
329 339Right-handed alpha
Helix 17
17
A
345 353Right-handed alpha
Helix 18
18
A
380 385Right-handed alpha
Helix 19
19
A
386 405Right-handed alpha
Helix 20
20
A
407 424Right-handed alpha
Helix 21
21
A
429 441Right-handed alpha
Helix 22
22
A
445 449Right-handed 310
Helix 23
23
A
460 469Right-handed alpha
Helix 24
24
A
472 475Right-handed 310
Helix 25
25
A
483 486Right-handed 310
Helix 26
26
A
506 515Right-handed alpha
Helix 27
27
A
580 584Right-handed 310
Helix 28
28
A
586 614Right-handed alpha
Helix 29
29
A
637 650Right-handed alpha
Helix 30
30
A
655 672Right-handed alpha
Helix 31
31
A
673 676Right-handed 310
Helix 32
32
A
677 691Right-handed alpha
Helix 33
33
A
696 705Right-handed alpha
Helix 34
34
A
708 720Right-handed alpha
Helix 35
35
A
734 754Right-handed alpha
Helix 36
36
A
759 763Right-handed 310
Helix 37
37
A
801 824Right-handed alpha
Helix 38
38
A
855 877Right-handed alpha
Helix 39
39
A
878 895Right-handed alpha
Helix 40
40
A
899 913Right-handed alpha
Helix 41
41
A
919 930Right-handed alpha
Helix 42
42
A
932 944Right-handed alpha
Helix 43
43
A
994 1001Right-handed alpha
Helix 44
44
B
95 99Right-handed 310
Helix 45
45
B
105 114Right-handed alpha
Helix 46
46
B
125 133Right-handed alpha
Helix 47
47
B
157 168Right-handed alpha
Helix 48
48
B
175 195Right-handed alpha
Helix 49
49
B
196 208Right-handed alpha
Helix 50
50
B
213 217Right-handed 310
Helix 51
51
B
222 227Right-handed alpha
Helix 52
52
B
227 234Right-handed alpha
Helix 53
53
B
236 249Right-handed alpha
Helix 54
54
B
250 252Right-handed 310
Helix 55
55
B
263 276Right-handed alpha
Helix 56
56
B
294 298Right-handed 310
Helix 57
57
B
322 326Right-handed 310
Helix 58
58
B
329 339Right-handed alpha
Helix 59
59
B
345 353Right-handed alpha
Helix 60
60
B
380 386Right-handed alpha
Helix 61
61
B
386 405Right-handed alpha
Helix 62
62
B
407 424Right-handed alpha
Helix 63
63
B
429 441Right-handed alpha
Helix 64
64
B
445 447Right-handed 310
Helix 65
65
B
448 453Right-handed alpha
Helix 66
66
B
460 469Right-handed alpha
Helix 67
67
B
472 475Right-handed 310
Helix 68
68
B
483 486Right-handed 310
Helix 69
69
B
506 515Right-handed alpha
Helix 70
70
B
581 584Right-handed 310
Helix 71
71
B
586 614Right-handed alpha
Helix 72
72
B
637 651Right-handed alpha
Helix 73
73
B
655 673Right-handed alpha
Helix 74
74
B
674 676Right-handed 310
Helix 75
75
B
677 691Right-handed alpha
Helix 76
76
B
696 706Right-handed alpha
Helix 77
77
B
708 721Right-handed alpha
Helix 78
78
B
734 754Right-handed alpha
Helix 79
79
B
759 763Right-handed 310
Helix 80
80
B
801 824Right-handed alpha
Helix 81
81
B
855 876Right-handed alpha
Helix 82
82
B
878 894Right-handed alpha
Helix 83
83
B
899 913Right-handed alpha
Helix 84
84
B
919 929Right-handed alpha
Helix 85
85
B
932 944Right-handed alpha
Helix 86
86
B
994 1001Right-handed alpha
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There are 12 sheets in PDB entry 2YPU. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, BA, BB, BC, BD, BE, BF,

There are 7 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 50first strand
Strand 2
A
63 69anti-parallel
Strand 3
A
74 79anti-parallel
Strand 4
A
254 260parallel
Strand 5
A
85 92anti-parallel
Strand 6
A
147 154anti-parallel
Strand 7
A
137 142anti-parallel
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There are 7 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
359 367first strand
Strand 2
A
370 378anti-parallel
Strand 3
A
312 320anti-parallel
Strand 4
A
477 481anti-parallel
Strand 5
A
300 304parallel
Strand 6
A
499 504anti-parallel
Strand 7
A
491 492anti-parallel
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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
549 553first strand
Strand 2
A
557 563anti-parallel
Strand 3
A
722 731parallel
Strand 4
A
756 757parallel
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There are 6 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
549 553first strand
Strand 2
A
557 563anti-parallel
Strand 3
A
722 731parallel
Strand 4
A
571 579anti-parallel
Strand 5
A
626 634anti-parallel
Strand 6
A
616 623anti-parallel
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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
756 757first strand
Strand 2
A
722 731parallel
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There are 6 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
833 840first strand
Strand 2
A
843 852anti-parallel
Strand 3
A
789 796anti-parallel
Strand 4
A
953 959anti-parallel
Strand 5
A
776 782parallel
Strand 6
A
990 991parallel
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There are 7 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
47 51first strand
Strand 2
B
63 69anti-parallel
Strand 3
B
74 79anti-parallel
Strand 4
B
254 260parallel
Strand 5
B
85 92anti-parallel
Strand 6
B
147 154anti-parallel
Strand 7
B
137 142anti-parallel
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There are 7 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
359 367first strand
Strand 2
B
370 378anti-parallel
Strand 3
B
312 320anti-parallel
Strand 4
B
477 481anti-parallel
Strand 5
B
300 304parallel
Strand 6
B
499 504anti-parallel
Strand 7
B
491 492anti-parallel
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There are 4 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
549 553first strand
Strand 2
B
557 563anti-parallel
Strand 3
B
722 731parallel
Strand 4
B
756 757parallel
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There are 6 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
549 553first strand
Strand 2
B
557 563anti-parallel
Strand 3
B
722 731parallel
Strand 4
B
571 579anti-parallel
Strand 5
B
626 634anti-parallel
Strand 6
B
616 622anti-parallel
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There are 2 strands in BE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
756 757first strand
Strand 2
B
722 731parallel
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There are 6 strands in BF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
833 840first strand
Strand 2
B
843 852anti-parallel
Strand 3
B
789 799anti-parallel
Strand 4
B
952 959anti-parallel
Strand 5
B
775 782parallel
Strand 6
B
990 991parallel
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