Analysis of interatomic Contacts of Structural Units in PDB entry:
2YS6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2YS6 entry

There is 1 chain in PDB entry 2YS6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN -7GLU 418
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 2YS6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
9 20Right-handed alpha
Helix 2
2
A
36 40Right-handed 310
Helix 3
3
A
50 61Right-handed alpha
Helix 4
4
A
70 76Right-handed alpha
Helix 5
5
A
77 85Right-handed alpha
Helix 6
6
A
93 102Right-handed alpha
Helix 7
7
A
102 114Right-handed alpha
Helix 8
8
A
125 137Right-handed alpha
Helix 9
9
A
158 173Right-handed alpha
Helix 10
10
A
238 249Right-handed alpha
Helix 11
11
A
249 260Right-handed alpha
Helix 12
12
A
291 297Right-handed alpha
Helix 13
13
A
298 300Right-handed 310
Helix 14
14
A
303 313Right-handed alpha
Helix 15
15
A
348 352Right-handed 310
Helix 16
16
A
386 399Right-handed alpha
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There are 7 sheets in PDB entry 2YS6. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 43first strand
Strand 2
A
25 32parallel
Strand 3
A
1 7parallel
Strand 4
A
63 68parallel
Strand 5
A
89 90parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
120 123first strand
Strand 2
A
182 186anti-parallel
Strand 3
A
140 144anti-parallel
Strand 4
A
153 156anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
203 206first strand
Strand 2
A
191 200anti-parallel
Strand 3
A
265 275anti-parallel
Strand 4
A
278 285anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
211 212first strand
Strand 2
A
229 232anti-parallel
Strand 3
A
325 333anti-parallel
Strand 4
A
376 384anti-parallel
Strand 5
A
357 360anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
211 212first strand
Strand 2
A
229 232anti-parallel
Strand 3
A
325 333anti-parallel
Strand 4
A
406 407anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
215 217first strand
Strand 2
A
221 224anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
345 346first strand
Strand 2
A
369 372anti-parallel
Strand 3
A
363 366anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il