Analysis of interatomic Contacts of Structural Units in PDB entry:
2YV3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2YV3 entry

There are 2 chains in PDB entry 2YV3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 328
B
 MET 1LEU 328
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 24 helices in PDB entry 2YV3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 23Right-handed alpha
Helix 2
2
A
35 39Right-handed 310
Helix 3
3
A
69 84Right-handed alpha
Helix 4
4
A
109 116Right-handed 310
Helix 5
5
A
124 142Right-handed alpha
Helix 6
6
A
153 157Right-handed 310
Helix 7
7
A
158 174Right-handed alpha
Helix 8
8
A
204 218Right-handed alpha
Helix 9
9
A
251 260Right-handed alpha
Helix 10
10
A
278 283Right-handed alpha
Helix 11
11
A
312 317Right-handed alpha
Helix 12
12
A
318 328Right-handed alpha
Helix 13
13
B
10 23Right-handed alpha
Helix 14
14
B
35 39Right-handed 310
Helix 15
15
B
71 84Right-handed alpha
Helix 16
16
B
105 110Right-handed alpha
Helix 17
17
B
111 116Right-handed 310
Helix 18
18
B
124 139Right-handed alpha
Helix 19
19
B
153 157Right-handed 310
Helix 20
20
B
159 174Right-handed alpha
Helix 21
21
B
204 219Right-handed alpha
Helix 22
22
B
251 260Right-handed alpha
Helix 23
23
B
270 274Right-handed 310
Helix 24
24
B
312 328Right-handed alpha
Back to top of page

There are 5 sheets in PDB entry 2YV3. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 45first strand
Strand 2
A
48 54anti-parallel
Strand 3
A
31 34parallel
Strand 4
A
3 6parallel
Strand 5
A
64 67parallel
Strand 6
A
87 90parallel
Strand 7
A
119 121parallel
Back to list of sheets
Back to top of page

There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
224 228first strand
Strand 2
A
143 151parallel
Strand 3
A
237 246anti-parallel
Strand 4
A
302 310anti-parallel
Strand 5
A
288 295anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
42 45first strand
Strand 2
B
48 54anti-parallel
Strand 3
B
29 34parallel
Strand 4
B
2 6parallel
Strand 5
B
64 67parallel
Strand 6
B
87 90parallel
Strand 7
B
119 121parallel
Back to list of sheets
Back to top of page

There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
143 145first strand
Strand 2
B
237 246anti-parallel
Strand 3
B
148 151anti-parallel
Strand 4
B
227 228parallel
Back to list of sheets
Back to top of page

There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
143 145first strand
Strand 2
B
237 246anti-parallel
Strand 3
B
302 310anti-parallel
Strand 4
B
288 295anti-parallel
Strand 5
B
265 267parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il