Analysis of interatomic Contacts of Structural Units in PDB entry:
2YV5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2YV5 entry

There is 1 chain in PDB entry 2YV5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ASP 302
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 2YV5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
95 109Right-handed alpha
Helix 2
2
A
119 123Right-handed 310
Helix 3
3
A
124 141Right-handed alpha
Helix 4
4
A
155 163Right-handed alpha
Helix 5
5
A
177 187Right-handed alpha
Helix 6
6
A
230 234Right-handed 310
Helix 7
7
A
236 246Right-handed 310
Helix 8
8
A
247 254Right-handed alpha
Helix 9
9
A
265 273Right-handed alpha
Helix 10
10
A
277 288Right-handed alpha
Helix 11
11
A
294 299Right-handed alpha
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There are 2 sheets in PDB entry 2YV5. Click on sheet of interest to get list of strands forming it: A, B,

There are 12 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
144 147first strand
Strand 2
A
112 117parallel
Strand 3
A
82 87parallel
Strand 4
A
167 171parallel
Strand 5
A
218 221parallel
Strand 6
A
209 214anti-parallel
Strand 7
A
7 15anti-parallel
Strand 8
A
49 56anti-parallel
Strand 9
A
59 65anti-parallel
Strand 10
A
29 34parallel
Strand 11
A
18 23anti-parallel
Strand 12
A
7 15anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
71 72first strand
Strand 2
A
77 78anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il