Analysis of interatomic Contacts of Structural Units in PDB entry:
2YV9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2YV9 entry

There are 2 chains in PDB entry 2YV9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 0ALA 284
B
 SER 15PRO 285
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 2YV9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
0 5Right-handed alpha
Helix 2
2
A
12 16Right-handed 310
Helix 3
3
A
36 52Right-handed alpha
Helix 4
4
A
66 74Right-handed alpha
Helix 5
5
A
84 87Right-handed 310
Helix 6
6
A
92 107Right-handed alpha
Helix 7
7
A
115 140Right-handed alpha
Helix 8
8
A
148 152Right-handed 310
Helix 9
9
A
153 178Right-handed alpha
Helix 10
10
A
188 208Right-handed alpha
Helix 11
11
A
217 228Right-handed alpha
Helix 12
12
A
230 236Right-handed alpha
Helix 13
13
A
239 251Right-handed alpha
Helix 14
14
A
256 262Right-handed alpha
Helix 15
15
A
271 280Right-handed alpha
Helix 16
16
B
36 52Right-handed alpha
Helix 17
17
B
66 74Right-handed alpha
Helix 18
18
B
84 87Right-handed 310
Helix 19
19
B
92 107Right-handed alpha
Helix 20
20
B
115 141Right-handed alpha
Helix 21
21
B
148 152Right-handed 310
Helix 22
22
B
153 178Right-handed alpha
Helix 23
23
B
188 208Right-handed alpha
Helix 24
24
B
217 229Right-handed alpha
Helix 25
25
B
230 237Right-handed alpha
Helix 26
26
B
239 252Right-handed alpha
Helix 27
27
B
256 262Right-handed alpha
Helix 28
28
B
271 282Right-handed alpha
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There are 2 sheets in PDB entry 2YV9. Click on sheet of interest to get list of strands forming it: A, B,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 62first strand
Strand 2
A
18 24parallel
Strand 3
A
80 83anti-parallel
Strand 4
A
88 90anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
56 62first strand
Strand 2
B
18 24parallel
Strand 3
B
80 83anti-parallel
Strand 4
B
88 90anti-parallel
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