Analysis of interatomic Contacts of Structural Units in PDB entry:
2YVK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2YVK entry

There are 4 chains in PDB entry 2YVK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLY 349
B
 MET 1GLY 349
C
 MET 1GLY 349
D
 MET 1GLY 349
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 73 helices in PDB entry 2YVK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
1 7Right-handed 310
Helix 2
2
A
23 26Right-handed 310
Helix 3
3
A
37 47Right-handed alpha
Helix 4
4
A
52 69Right-handed alpha
Helix 5
5
A
75 92Right-handed alpha
Helix 6
6
A
97 111Right-handed alpha
Helix 7
7
A
116 147Right-handed alpha
Helix 8
8
A
148 150Right-handed 310
Helix 9
9
A
174 183Right-handed alpha
Helix 10
10
A
198 203Right-handed alpha
Helix 11
11
A
203 210Right-handed alpha
Helix 12
12
A
219 221Right-handed 310
Helix 13
13
A
222 230Right-handed alpha
Helix 14
14
A
253 264Right-handed alpha
Helix 15
15
A
273 275Right-handed 310
Helix 16
16
A
283 287Right-handed 310
Helix 17
17
A
294 298Right-handed alpha
Helix 18
18
A
321 325Right-handed 310
Helix 19
19
A
338 347Right-handed alpha
Helix 20
20
B
3 7Right-handed 310
Helix 21
21
B
23 26Right-handed 310
Helix 22
22
B
37 47Right-handed alpha
Helix 23
23
B
52 69Right-handed alpha
Helix 24
24
B
75 92Right-handed alpha
Helix 25
25
B
97 110Right-handed alpha
Helix 26
26
B
116 148Right-handed alpha
Helix 27
27
B
174 181Right-handed alpha
Helix 28
28
B
198 203Right-handed alpha
Helix 29
29
B
203 211Right-handed alpha
Helix 30
30
B
219 221Right-handed 310
Helix 31
31
B
222 230Right-handed alpha
Helix 32
32
B
253 264Right-handed alpha
Helix 33
33
B
273 275Right-handed 310
Helix 34
34
B
283 287Right-handed 310
Helix 35
35
B
294 298Right-handed alpha
Helix 36
36
B
321 325Right-handed 310
Helix 37
37
B
338 347Right-handed alpha
Helix 38
38
C
3 7Right-handed 310
Helix 39
39
C
23 26Right-handed 310
Helix 40
40
C
37 47Right-handed alpha
Helix 41
41
C
52 68Right-handed alpha
Helix 42
42
C
75 91Right-handed alpha
Helix 43
43
C
97 111Right-handed alpha
Helix 44
44
C
116 147Right-handed alpha
Helix 45
45
C
148 150Right-handed 310
Helix 46
46
C
174 183Right-handed alpha
Helix 47
47
C
198 203Right-handed alpha
Helix 48
48
C
203 212Right-handed alpha
Helix 49
49
C
219 221Right-handed 310
Helix 50
50
C
222 230Right-handed alpha
Helix 51
51
C
253 264Right-handed alpha
Helix 52
52
C
273 275Right-handed 310
Helix 53
53
C
283 287Right-handed 310
Helix 54
54
C
294 298Right-handed alpha
Helix 55
55
C
321 325Right-handed 310
Helix 56
56
C
338 347Right-handed alpha
Helix 57
57
D
3 7Right-handed 310
Helix 58
58
D
37 47Right-handed alpha
Helix 59
59
D
52 70Right-handed alpha
Helix 60
60
D
75 92Right-handed alpha
Helix 61
61
D
98 111Right-handed alpha
Helix 62
62
D
116 148Right-handed alpha
Helix 63
63
D
174 183Right-handed alpha
Helix 64
64
D
198 203Right-handed alpha
Helix 65
65
D
203 212Right-handed alpha
Helix 66
66
D
219 221Right-handed 310
Helix 67
67
D
222 230Right-handed alpha
Helix 68
68
D
253 264Right-handed alpha
Helix 69
69
D
273 275Right-handed 310
Helix 70
70
D
283 287Right-handed 310
Helix 71
71
D
294 299Right-handed alpha
Helix 72
72
D
321 325Right-handed 310
Helix 73
73
D
338 348Right-handed alpha
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There are 15 sheets in PDB entry 2YVK. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 13first strand
Strand 2
A
18 21anti-parallel
Strand 3
A
32 35anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
214 218first strand
Strand 2
A
188 192parallel
Strand 3
A
155 158parallel
Strand 4
A
234 237parallel
Strand 5
A
268 271parallel
Strand 6
A
327 330parallel
Strand 7
A
333 335anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
277 278first strand
Strand 2
A
241 243parallel
Strand 3
A
248 251anti-parallel
Strand 4
A
317 320anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
299 300first strand
Strand 2
A
303 304anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
11 13first strand
Strand 2
B
18 21anti-parallel
Strand 3
B
32 35anti-parallel
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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
214 218first strand
Strand 2
B
188 192parallel
Strand 3
B
155 158parallel
Strand 4
B
234 237parallel
Strand 5
B
268 271parallel
Strand 6
B
327 329parallel
Strand 7
B
334 335anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
277 278first strand
Strand 2
B
241 243parallel
Strand 3
B
248 251anti-parallel
Strand 4
B
317 320anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
299 300first strand
Strand 2
B
303 304anti-parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
11 13first strand
Strand 2
C
18 21anti-parallel
Strand 3
C
32 35anti-parallel
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There are 7 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
214 218first strand
Strand 2
C
188 192parallel
Strand 3
C
155 158parallel
Strand 4
C
234 237parallel
Strand 5
C
268 271parallel
Strand 6
C
327 330parallel
Strand 7
C
333 335anti-parallel
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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
277 278first strand
Strand 2
C
241 243parallel
Strand 3
C
248 251anti-parallel
Strand 4
C
317 320anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
299 300first strand
Strand 2
C
303 304anti-parallel
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There are 3 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
11 13first strand
Strand 2
D
18 21anti-parallel
Strand 3
D
32 35anti-parallel
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There are 7 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
214 218first strand
Strand 2
D
188 192parallel
Strand 3
D
155 158parallel
Strand 4
D
234 237parallel
Strand 5
D
268 271parallel
Strand 6
D
327 330parallel
Strand 7
D
333 335anti-parallel
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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
277 278first strand
Strand 2
D
241 243parallel
Strand 3
D
248 251anti-parallel
Strand 4
D
317 320anti-parallel
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