Analysis of interatomic Contacts of Structural Units in PDB entry:
2YVQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2YVQ entry

There is 1 chain in PDB entry 2YVQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 5GLN 1478
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 2YVQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
1343 1351Right-handed alpha
Helix 2
2
A
1367 1369Right-handed 310
Helix 3
3
A
1370 1383Right-handed alpha
Helix 4
4
A
1392 1401Right-handed alpha
Helix 5
5
A
1410 1414Right-handed 310
Helix 6
6
A
1422 1429Right-handed alpha
Helix 7
7
A
1442 1444Right-handed 310
Helix 8
8
A
1445 1459Right-handed alpha
Helix 9
9
A
1466 1476Right-handed alpha
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There is 1 sheet ( A) in PDB entry 2YVQ.

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1406 1408first strand
Strand 2
A
1387 1391parallel
Strand 3
A
1361 1365parallel
Strand 4
A
1434 1437parallel
Strand 5
A
1463 1464parallel
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