Analysis of interatomic Contacts of Structural Units in PDB entry:
2YVS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2YVS entry

There are 2 chains in PDB entry 2YVS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 219
B
 MET 1LEU 219
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 14 helices in PDB entry 2YVS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
17 26Right-handed alpha
Helix 2
2
A
41 49Right-handed alpha
Helix 3
3
A
57 60Right-handed 310
Helix 4
4
A
89 95Right-handed alpha
Helix 5
5
A
156 168Right-handed alpha
Helix 6
6
A
178 181Right-handed 310
Helix 7
7
A
209 217Right-handed alpha
Helix 8
8
B
17 25Right-handed alpha
Helix 9
9
B
41 50Right-handed alpha
Helix 10
10
B
57 60Right-handed 310
Helix 11
11
B
89 95Right-handed alpha
Helix 12
12
B
156 168Right-handed alpha
Helix 13
13
B
178 181Right-handed 310
Helix 14
14
B
209 219Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 2YVS. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 4first strand
Strand 2
A
9 13anti-parallel
Strand 3
A
103 110anti-parallel
Strand 4
A
62 68anti-parallel
Strand 5
A
74 78anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 31first strand
Strand 2
A
112 113anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
37 38first strand
Strand 2
A
175 176parallel
Back to list of sheets
Back to top of page

There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
170 171first strand
Strand 2
A
116 123anti-parallel
Strand 3
A
147 155anti-parallel
Strand 4
A
137 142anti-parallel
Strand 5
A
192 194anti-parallel
Strand 6
A
198 201anti-parallel
Strand 7
A
185 187anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 4first strand
Strand 2
B
9 13anti-parallel
Strand 3
B
103 110anti-parallel
Strand 4
B
62 68anti-parallel
Strand 5
B
74 78anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
30 31first strand
Strand 2
B
112 113anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
37 38first strand
Strand 2
B
175 176parallel
Back to list of sheets
Back to top of page

There are 7 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
170 171first strand
Strand 2
B
116 123anti-parallel
Strand 3
B
147 155anti-parallel
Strand 4
B
137 142anti-parallel
Strand 5
B
192 193anti-parallel
Strand 6
B
198 201anti-parallel
Strand 7
B
185 187anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il