Analysis of interatomic Contacts of Structural Units in PDB entry:
2YVT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2YVT entry

There is 1 chain in PDB entry 2YVT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 4SER 260
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 2YVT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
17 19Right-handed 310
Helix 2
2
A
20 32Right-handed alpha
Helix 3
3
A
45 58Right-handed alpha
Helix 4
4
A
64 87Right-handed alpha
Helix 5
5
A
102 113Right-handed alpha
Helix 6
6
A
158 165Right-handed alpha
Helix 7
7
A
166 171Right-handed 310
Helix 8
8
A
201 212Right-handed alpha
Helix 9
9
A
238 241Right-handed 310
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There are 3 sheets in PDB entry 2YVT. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
120 122first strand
Strand 2
A
91 95parallel
Strand 3
A
35 39parallel
Strand 4
A
7 12parallel
Strand 5
A
243 248anti-parallel
Strand 6
A
253 258anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
126 130first strand
Strand 2
A
134 139anti-parallel
Strand 3
A
175 180parallel
Strand 4
A
215 218parallel
Strand 5
A
231 235parallel
Strand 6
A
224 228anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
142 144first strand
Strand 2
A
155 157parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il