Analysis of interatomic Contacts of Structural Units in PDB entry:
2YVW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2YVW entry

There is 1 chain in PDB entry 2YVW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 9GLU 424
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 2YVW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
30 41Right-handed alpha
Helix 2
2
A
42 44Right-handed 310
Helix 3
3
A
56 69Right-handed alpha
Helix 4
4
A
92 99Right-handed alpha
Helix 5
5
A
100 104Right-handed 310
Helix 6
6
A
105 114Right-handed alpha
Helix 7
7
A
131 141Right-handed alpha
Helix 8
8
A
170 182Right-handed alpha
Helix 9
9
A
196 209Right-handed alpha
Helix 10
10
A
238 252Right-handed alpha
Helix 11
11
A
262 265Right-handed 310
Helix 12
12
A
266 277Right-handed alpha
Helix 13
13
A
309 321Right-handed alpha
Helix 14
14
A
338 346Right-handed alpha
Helix 15
15
A
379 389Right-handed alpha
Helix 16
16
A
398 405Right-handed alpha
Helix 17
17
A
407 415Right-handed alpha
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There are 6 sheets in PDB entry 2YVW. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
370 372first strand
Strand 2
A
392 396parallel
Strand 3
A
12 16anti-parallel
Strand 4
A
419 422anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
22 26first strand
Strand 2
A
255 259parallel
Strand 3
A
286 291anti-parallel
Strand 4
A
278 283anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
72 76first strand
Strand 2
A
79 83anti-parallel
Strand 3
A
48 51anti-parallel
Strand 4
A
232 234parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
90 91first strand
Strand 2
A
115 119parallel
Strand 3
A
151 155anti-parallel
Strand 4
A
144 148anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
163 165first strand
Strand 2
A
187 191parallel
Strand 3
A
219 223anti-parallel
Strand 4
A
212 216anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
300 301first strand
Strand 2
A
326 330parallel
Strand 3
A
357 361anti-parallel
Strand 4
A
351 354anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il