Analysis of interatomic Contacts of Structural Units in PDB entry:
2YVY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2YVY entry

There is 1 chain in PDB entry 2YVY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 5LEU 252
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 2YVY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
9 16Right-handed alpha
Helix 2
2
A
17 28Right-handed alpha
Helix 3
3
A
29 36Right-handed alpha
Helix 4
4
A
37 40Right-handed 310
Helix 5
5
A
41 52Right-handed alpha
Helix 6
6
A
53 63Right-handed alpha
Helix 7
7
A
65 76Right-handed alpha
Helix 8
8
A
77 88Right-handed alpha
Helix 9
9
A
89 104Right-handed alpha
Helix 10
10
A
104 115Right-handed alpha
Helix 11
11
A
116 129Right-handed alpha
Helix 12
12
A
133 137Right-handed 310
Helix 13
13
A
150 162Right-handed alpha
Helix 14
14
A
186 192Right-handed alpha
Helix 15
15
A
214 226Right-handed alpha
Helix 16
16
A
245 252Right-handed alpha
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There are 2 sheets in PDB entry 2YVY. Click on sheet of interest to get list of strands forming it: A, B,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
144 145first strand
Strand 2
A
170 174parallel
Strand 3
A
180 185anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
209 210first strand
Strand 2
A
229 233parallel
Strand 3
A
239 244anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il