Analysis of interatomic Contacts of Structural Units in PDB entry:
2YW4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2YW4 entry

There is 1 chain in PDB entry 2YW4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 4PRO 203
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 11 helices in PDB entry 2YW4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
7 14Right-handed alpha
Helix 2
2
A
26 37Right-handed alpha
Helix 3
3
A
48 59Right-handed alpha
Helix 4
4
A
72 82Right-handed alpha
Helix 5
5
A
93 104Right-handed alpha
Helix 6
6
A
113 123Right-handed alpha
Helix 7
7
A
137 149Right-handed alpha
Helix 8
8
A
161 163Right-handed 310
Helix 9
9
A
164 170Right-handed alpha
Helix 10
10
A
180 184Right-handed 310
Helix 11
11
A
186 201Right-handed alpha
Back to top of page

There is 1 sheet ( A) in PDB entry 2YW4.

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
153 156first strand
Strand 2
A
127 130parallel
Strand 3
A
107 111parallel
Strand 4
A
86 89parallel
Strand 5
A
64 68parallel
Strand 6
A
41 45parallel
Strand 7
A
15 19parallel
Strand 8
A
177 179parallel
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il