Analysis of interatomic Contacts of Structural Units in PDB entry:
2YW9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2YW9 entry

There are 8 chains in PDB entry 2YW9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLY 256
B
 MET 1GLY 256
C
 MET 1LEU 259
D
 MET 1GLY 256
E
 MET 1MET 257
F
 MET 1MET 257
G
 MET 1GLY 256
H
 MET 1GLY 256
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are118 helices in PDB entry 2YW9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
21 33Right-handed alpha
Helix 2
2
A
43 45Right-handed 310
Helix 3
3
A
46 57Right-handed alpha
Helix 4
4
A
69 85Right-handed alpha
Helix 5
5
A
98 103Right-handed alpha
Helix 6
6
A
105 109Right-handed 310
Helix 7
7
A
110 122Right-handed alpha
Helix 8
8
A
122 133Right-handed alpha
Helix 9
9
A
147 151Right-handed 310
Helix 10
10
A
157 179Right-handed alpha
Helix 11
11
A
180 182Right-handed 310
Helix 12
12
A
210 215Right-handed alpha
Helix 13
13
A
222 235Right-handed alpha
Helix 14
14
A
236 239Right-handed 310
Helix 15
15
A
251 255Right-handed 310
Helix 16
16
B
21 33Right-handed alpha
Helix 17
17
B
43 45Right-handed 310
Helix 18
18
B
46 57Right-handed alpha
Helix 19
19
B
69 85Right-handed alpha
Helix 20
20
B
98 103Right-handed alpha
Helix 21
21
B
105 109Right-handed 310
Helix 22
22
B
110 122Right-handed alpha
Helix 23
23
B
122 133Right-handed alpha
Helix 24
24
B
147 151Right-handed 310
Helix 25
25
B
158 179Right-handed alpha
Helix 26
26
B
196 201Right-handed 310
Helix 27
27
B
203 215Right-handed alpha
Helix 28
28
B
222 235Right-handed alpha
Helix 29
29
B
236 239Right-handed 310
Helix 30
30
B
251 255Right-handed 310
Helix 31
31
C
21 34Right-handed alpha
Helix 32
32
C
43 45Right-handed 310
Helix 33
33
C
46 57Right-handed alpha
Helix 34
34
C
69 85Right-handed alpha
Helix 35
35
C
98 103Right-handed alpha
Helix 36
36
C
105 109Right-handed 310
Helix 37
37
C
110 122Right-handed alpha
Helix 38
38
C
122 133Right-handed alpha
Helix 39
39
C
147 151Right-handed 310
Helix 40
40
C
157 179Right-handed alpha
Helix 41
41
C
208 215Right-handed alpha
Helix 42
42
C
222 235Right-handed alpha
Helix 43
43
C
236 239Right-handed 310
Helix 44
44
C
251 255Right-handed 310
Helix 45
45
D
21 33Right-handed alpha
Helix 46
46
D
43 45Right-handed 310
Helix 47
47
D
46 57Right-handed alpha
Helix 48
48
D
69 85Right-handed alpha
Helix 49
49
D
98 103Right-handed alpha
Helix 50
50
D
105 109Right-handed 310
Helix 51
51
D
110 122Right-handed alpha
Helix 52
52
D
122 133Right-handed alpha
Helix 53
53
D
147 151Right-handed 310
Helix 54
54
D
157 179Right-handed alpha
Helix 55
55
D
204 215Right-handed alpha
Helix 56
56
D
222 235Right-handed alpha
Helix 57
57
D
236 239Right-handed 310
Helix 58
58
D
251 255Right-handed 310
Helix 59
59
E
21 33Right-handed alpha
Helix 60
60
E
43 45Right-handed 310
Helix 61
61
E
46 57Right-handed alpha
Helix 62
62
E
69 85Right-handed alpha
Helix 63
63
E
98 103Right-handed alpha
Helix 64
64
E
105 109Right-handed 310
Helix 65
65
E
110 122Right-handed alpha
Helix 66
66
E
122 133Right-handed alpha
Helix 67
67
E
147 151Right-handed 310
Helix 68
68
E
157 179Right-handed alpha
Helix 69
69
E
180 182Right-handed 310
Helix 70
70
E
207 215Right-handed alpha
Helix 71
71
E
222 235Right-handed alpha
Helix 72
72
E
236 239Right-handed 310
Helix 73
73
E
251 255Right-handed 310
Helix 74
74
F
21 34Right-handed alpha
Helix 75
75
F
43 45Right-handed 310
Helix 76
76
F
46 57Right-handed alpha
Helix 77
77
F
69 85Right-handed alpha
Helix 78
78
F
98 103Right-handed alpha
Helix 79
79
F
105 109Right-handed 310
Helix 80
80
F
110 122Right-handed alpha
Helix 81
81
F
122 133Right-handed alpha
Helix 82
82
F
147 151Right-handed 310
Helix 83
83
F
158 179Right-handed alpha
Helix 84
84
F
180 182Right-handed 310
Helix 85
85
F
208 215Right-handed alpha
Helix 86
86
F
222 235Right-handed alpha
Helix 87
87
F
236 239Right-handed 310
Helix 88
88
F
251 255Right-handed 310
Helix 89
89
G
21 33Right-handed alpha
Helix 90
90
G
43 45Right-handed 310
Helix 91
91
G
46 57Right-handed alpha
Helix 92
92
G
69 85Right-handed alpha
Helix 93
93
G
98 103Right-handed alpha
Helix 94
94
G
105 109Right-handed 310
Helix 95
95
G
110 122Right-handed alpha
Helix 96
96
G
122 133Right-handed alpha
Helix 97
97
G
147 151Right-handed 310
Helix 98
98
G
157 179Right-handed alpha
Helix 99
99
G
180 182Right-handed 310
Helix 100
100
G
196 201Right-handed 310
Helix 101
101
G
203 215Right-handed alpha
Helix 102
102
G
222 235Right-handed alpha
Helix 103
103
G
236 239Right-handed 310
Helix 104
104
G
251 255Right-handed 310
Helix 105
105
H
21 33Right-handed alpha
Helix 106
106
H
43 45Right-handed 310
Helix 107
107
H
46 57Right-handed alpha
Helix 108
108
H
69 85Right-handed alpha
Helix 109
109
H
98 103Right-handed alpha
Helix 110
110
H
105 109Right-handed 310
Helix 111
111
H
110 122Right-handed alpha
Helix 112
112
H
122 133Right-handed alpha
Helix 113
113
H
147 151Right-handed 310
Helix 114
114
H
157 179Right-handed alpha
Helix 115
115
H
204 215Right-handed alpha
Helix 116
116
H
222 235Right-handed alpha
Helix 117
117
H
236 239Right-handed 310
Helix 118
118
H
251 255Right-handed 310
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There are 12 sheets in PDB entry 2YW9. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 4first strand
Strand 2
C
2 4anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 64first strand
Strand 2
A
36 41parallel
Strand 3
A
10 14parallel
Strand 4
A
87 92parallel
Strand 5
A
136 146parallel
Strand 6
A
184 190parallel
Strand 7
A
245 248parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 4first strand
Strand 2
D
2 4anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
61 64first strand
Strand 2
B
36 41parallel
Strand 3
B
10 14parallel
Strand 4
B
87 92parallel
Strand 5
B
136 146parallel
Strand 6
B
184 190parallel
Strand 7
B
245 248parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
61 64first strand
Strand 2
C
36 41parallel
Strand 3
C
10 14parallel
Strand 4
C
87 92parallel
Strand 5
C
136 146parallel
Strand 6
C
184 190parallel
Strand 7
C
245 248parallel
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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
61 64first strand
Strand 2
D
36 41parallel
Strand 3
D
10 14parallel
Strand 4
D
87 92parallel
Strand 5
D
136 146parallel
Strand 6
D
184 190parallel
Strand 7
D
245 248parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
2 4first strand
Strand 2
G
2 4anti-parallel
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There are 7 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
61 64first strand
Strand 2
E
36 41parallel
Strand 3
E
10 14parallel
Strand 4
E
87 92parallel
Strand 5
E
136 146parallel
Strand 6
E
184 190parallel
Strand 7
E
245 248parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
2 4first strand
Strand 2
H
2 4anti-parallel
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There are 7 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
61 64first strand
Strand 2
F
36 41parallel
Strand 3
F
10 14parallel
Strand 4
F
87 92parallel
Strand 5
F
136 146parallel
Strand 6
F
184 190parallel
Strand 7
F
245 248parallel
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There are 7 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
61 64first strand
Strand 2
G
36 41parallel
Strand 3
G
10 14parallel
Strand 4
G
87 92parallel
Strand 5
G
136 146parallel
Strand 6
G
184 190parallel
Strand 7
G
245 248parallel
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There are 7 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
61 64first strand
Strand 2
H
36 41parallel
Strand 3
H
10 14parallel
Strand 4
H
87 92parallel
Strand 5
H
136 146parallel
Strand 6
H
184 190parallel
Strand 7
H
245 248parallel
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