Analysis of interatomic Contacts of Structural Units in PDB entry:
2YWR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2YWR entry

There is 1 chain in PDB entry 2YWR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 1PHE 216
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 7 helices in PDB entry 2YWR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 24Right-handed alpha
Helix 2
2
A
41 51Right-handed alpha
Helix 3
3
A
58 62Right-handed 310
Helix 4
4
A
64 79Right-handed alpha
Helix 5
5
A
94 99Right-handed alpha
Helix 6
6
A
120 129Right-handed alpha
Helix 7
7
A
162 187Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 2YWR. Click on sheet of interest to get list of strands forming it: A, B,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
54 56first strand
Strand 2
A
29 36parallel
Strand 3
A
2 8parallel
Strand 4
A
83 86parallel
Strand 5
A
105 109parallel
Strand 6
A
132 139anti-parallel
Strand 7
A
149 156anti-parallel
Strand 8
A
209 210anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
190 193first strand
Strand 2
A
196 199anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il