Analysis of interatomic Contacts of Structural Units in PDB entry:
2YWV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2YWV entry

There are 2 chains in PDB entry 2YWV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLU 237
B
 MET 1GLU 237
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 2YWV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
46 65Right-handed alpha
Helix 2
2
A
99 107Right-handed alpha
Helix 3
3
A
125 129Right-handed 310
Helix 4
4
A
134 142Right-handed alpha
Helix 5
5
A
145 170Right-handed alpha
Helix 6
6
A
213 218Right-handed alpha
Helix 7
7
A
222 234Right-handed alpha
Helix 8
8
B
46 65Right-handed alpha
Helix 9
9
B
99 107Right-handed alpha
Helix 10
10
B
125 129Right-handed 310
Helix 11
11
B
134 142Right-handed alpha
Helix 12
12
B
145 169Right-handed alpha
Helix 13
13
B
213 218Right-handed alpha
Helix 14
14
B
222 234Right-handed alpha
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There are 8 sheets in PDB entry 2YWV. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 10first strand
Strand 2
A
14 19anti-parallel
Strand 3
A
24 29anti-parallel
Strand 4
A
79 83anti-parallel
Strand 5
A
71 74anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 35first strand
Strand 2
A
40 43anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
86 87first strand
Strand 2
A
181 183anti-parallel
Strand 3
A
189 191anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
132 133first strand
Strand 2
A
112 123anti-parallel
Strand 3
A
90 98anti-parallel
Strand 4
A
172 179anti-parallel
Strand 5
A
200 204anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 10first strand
Strand 2
B
14 19anti-parallel
Strand 3
B
24 29anti-parallel
Strand 4
B
79 83anti-parallel
Strand 5
B
71 74anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
32 35first strand
Strand 2
B
40 43anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
86 87first strand
Strand 2
B
172 183anti-parallel
Strand 3
B
189 192anti-parallel
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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
132 133first strand
Strand 2
B
113 123anti-parallel
Strand 3
B
90 97anti-parallel
Strand 4
B
172 183anti-parallel
Strand 5
B
200 204anti-parallel
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