Analysis of interatomic Contacts of Structural Units in PDB entry:
2YX0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2YX0 entry

There is 1 chain in PDB entry 2YX0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 11HIS 342
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 15 helices in PDB entry 2YX0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
21 31Right-handed alpha
Helix 2
2
A
47 55Right-handed alpha
Helix 3
3
A
58 65Right-handed alpha
Helix 4
4
A
67 69Right-handed 310
Helix 5
5
A
106 123Right-handed alpha
Helix 6
6
A
132 140Right-handed alpha
Helix 7
7
A
152 156Right-handed 310
Helix 8
8
A
158 169Right-handed alpha
Helix 9
9
A
181 191Right-handed alpha
Helix 10
10
A
206 215Right-handed alpha
Helix 11
11
A
220 233Right-handed alpha
Helix 12
12
A
253 265Right-handed alpha
Helix 13
13
A
285 289Right-handed 310
Helix 14
14
A
291 304Right-handed alpha
Helix 15
15
A
316 318Right-handed 310
Back to top of page

There are 2 sheets in PDB entry 2YX0. Click on sheet of interest to get list of strands forming it: A, B,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 36first strand
Strand 2
A
40 42anti-parallel
Strand 3
A
71 75anti-parallel
Strand 4
A
144 147parallel
Strand 5
A
172 177parallel
Strand 6
A
197 202parallel
Strand 7
A
238 245parallel
Strand 8
A
268 273parallel
Strand 9
A
320 325anti-parallel
Strand 10
A
309 315anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
329 333first strand
Strand 2
A
337 339parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il