Analysis of interatomic Contacts of Structural Units in PDB entry:
2YXV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2YXV entry

There are 2 chains in PDB entry 2YXV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 30HIS 521
B
 GLU 30GLY 517
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 2YXV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
108 112Right-handed 310
Helix 2
2
A
147 155Right-handed alpha
Helix 3
3
A
164 169Right-handed alpha
Helix 4
4
A
201 208Right-handed alpha
Helix 5
5
A
463 467Right-handed 310
Helix 6
6
A
491 495Right-handed 310
Helix 7
7
A
502 508Right-handed alpha
Helix 8
8
B
108 112Right-handed 310
Helix 9
9
B
147 155Right-handed alpha
Helix 10
10
B
164 169Right-handed alpha
Helix 11
11
B
201 208Right-handed alpha
Helix 12
12
B
463 467Right-handed 310
Helix 13
13
B
491 495Right-handed 310
Helix 14
14
B
502 508Right-handed alpha
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There are 12 sheets in PDB entry 2YXV. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 40first strand
Strand 2
A
77 81parallel
Strand 3
A
158 163parallel
Strand 4
A
136 141anti-parallel
Strand 5
A
101 103anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 69first strand
Strand 2
A
47 59anti-parallel
Strand 3
A
86 92parallel
Strand 4
A
124 129anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
219 220first strand
Strand 2
A
213 216anti-parallel
Strand 3
A
180 188anti-parallel
Strand 4
A
229 237parallel
Strand 5
A
280 287anti-parallel
Strand 6
A
254 259anti-parallel
Strand 7
A
262 270anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
223 227first strand
Strand 2
A
314 322parallel
Strand 3
A
293 297anti-parallel
Strand 4
A
244 248anti-parallel
Strand 5
A
273 275anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
407 410first strand
Strand 2
A
347 356anti-parallel
Strand 3
A
430 435parallel
Strand 4
A
479 484anti-parallel
Strand 5
A
453 456anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
422 424first strand
Strand 2
A
511 516parallel
Strand 3
A
496 500anti-parallel
Strand 4
A
443 447anti-parallel
Strand 5
A
472 475anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
39 40first strand
Strand 2
B
77 81parallel
Strand 3
B
158 163parallel
Strand 4
B
136 141anti-parallel
Strand 5
B
101 103anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
62 69first strand
Strand 2
B
47 59anti-parallel
Strand 3
B
85 92parallel
Strand 4
B
124 130anti-parallel
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There are 6 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
213 216first strand
Strand 2
B
180 188anti-parallel
Strand 3
B
223 237parallel
Strand 4
B
280 287anti-parallel
Strand 5
B
254 259anti-parallel
Strand 6
B
262 270anti-parallel
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There are 7 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
213 216first strand
Strand 2
B
180 188anti-parallel
Strand 3
B
223 237parallel
Strand 4
B
314 325parallel
Strand 5
B
293 297anti-parallel
Strand 6
B
244 248anti-parallel
Strand 7
B
273 275anti-parallel
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There are 5 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
407 410first strand
Strand 2
B
347 356anti-parallel
Strand 3
B
430 435parallel
Strand 4
B
479 484anti-parallel
Strand 5
B
453 456anti-parallel
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There are 5 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
422 425first strand
Strand 2
B
511 517parallel
Strand 3
B
496 500anti-parallel
Strand 4
B
443 447anti-parallel
Strand 5
B
472 475anti-parallel
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