Analysis of interatomic Contacts of Structural Units in PDB entry:
2YXZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2YXZ entry

There are 4 chains in PDB entry 2YXZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ARG 305
B
 MET 1ARG 305
C
 MET 1ARG 305
D
 ARG 2ARG 305
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 49 helices in PDB entry 2YXZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 7Right-handed alpha
Helix 2
2
A
7 16Right-handed alpha
Helix 3
3
A
51 55Right-handed alpha
Helix 4
4
A
60 79Right-handed alpha
Helix 5
5
A
97 115Right-handed alpha
Helix 6
6
A
162 174Right-handed alpha
Helix 7
7
A
180 189Right-handed alpha
Helix 8
8
A
193 200Right-handed 310
Helix 9
9
A
212 222Right-handed alpha
Helix 10
10
A
235 243Right-handed alpha
Helix 11
11
A
244 254Right-handed alpha
Helix 12
12
A
269 280Right-handed alpha
Helix 13
13
B
2 7Right-handed alpha
Helix 14
14
B
7 16Right-handed alpha
Helix 15
15
B
51 55Right-handed alpha
Helix 16
16
B
60 79Right-handed alpha
Helix 17
17
B
97 115Right-handed alpha
Helix 18
18
B
162 174Right-handed alpha
Helix 19
19
B
180 189Right-handed alpha
Helix 20
20
B
193 200Right-handed 310
Helix 21
21
B
212 222Right-handed alpha
Helix 22
22
B
235 243Right-handed alpha
Helix 23
23
B
244 254Right-handed alpha
Helix 24
24
B
266 280Right-handed alpha
Helix 25
25
C
2 7Right-handed alpha
Helix 26
26
C
7 16Right-handed alpha
Helix 27
27
C
51 55Right-handed alpha
Helix 28
28
C
60 79Right-handed alpha
Helix 29
29
C
97 115Right-handed alpha
Helix 30
30
C
162 174Right-handed alpha
Helix 31
31
C
180 189Right-handed alpha
Helix 32
32
C
193 200Right-handed 310
Helix 33
33
C
212 222Right-handed alpha
Helix 34
34
C
235 243Right-handed alpha
Helix 35
35
C
244 254Right-handed alpha
Helix 36
36
C
266 268Right-handed 310
Helix 37
37
C
269 281Right-handed alpha
Helix 38
38
D
2 7Right-handed alpha
Helix 39
39
D
7 16Right-handed alpha
Helix 40
40
D
51 55Right-handed alpha
Helix 41
41
D
60 79Right-handed alpha
Helix 42
42
D
97 115Right-handed alpha
Helix 43
43
D
162 174Right-handed alpha
Helix 44
44
D
180 189Right-handed alpha
Helix 45
45
D
193 200Right-handed 310
Helix 46
46
D
212 222Right-handed alpha
Helix 47
47
D
235 243Right-handed alpha
Helix 48
48
D
244 254Right-handed alpha
Helix 49
49
D
268 281Right-handed alpha
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There are 8 sheets in PDB entry 2YXZ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 37first strand
Strand 2
A
40 50anti-parallel
Strand 3
A
131 140anti-parallel
Strand 4
A
81 92anti-parallel
Strand 5
A
118 126parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
205 209first strand
Strand 2
A
260 265anti-parallel
Strand 3
A
153 157anti-parallel
Strand 4
A
284 291anti-parallel
Strand 5
A
226 229anti-parallel
Strand 6
A
296 298parallel
Strand 7
A
301 302anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
33 36first strand
Strand 2
B
41 50anti-parallel
Strand 3
B
131 140anti-parallel
Strand 4
B
82 92anti-parallel
Strand 5
B
118 126parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
205 209first strand
Strand 2
B
260 265anti-parallel
Strand 3
B
153 157anti-parallel
Strand 4
B
284 291anti-parallel
Strand 5
B
226 229anti-parallel
Strand 6
B
296 298parallel
Strand 7
B
301 302anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
33 37first strand
Strand 2
C
40 50anti-parallel
Strand 3
C
131 140anti-parallel
Strand 4
C
82 92anti-parallel
Strand 5
C
118 126parallel
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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
205 209first strand
Strand 2
C
260 265anti-parallel
Strand 3
C
153 157anti-parallel
Strand 4
C
284 291anti-parallel
Strand 5
C
226 229anti-parallel
Strand 6
C
296 298parallel
Strand 7
C
301 302anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
33 37first strand
Strand 2
D
40 50anti-parallel
Strand 3
D
131 140anti-parallel
Strand 4
D
82 92anti-parallel
Strand 5
D
119 126parallel
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There are 7 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
205 209first strand
Strand 2
D
260 265anti-parallel
Strand 3
D
153 157anti-parallel
Strand 4
D
284 291anti-parallel
Strand 5
D
226 229anti-parallel
Strand 6
D
295 298parallel
Strand 7
D
301 302anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il