Analysis of interatomic Contacts of Structural Units in PDB entry:
2YY5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2YY5 entry

There are 4 chains in PDB entry 2YY5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 2LYS 346
B
 MET 1LYS 346
C
 MET 2LYS 346
D
 MET 1LYS 346
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 76 helices in PDB entry 2YY5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
16 23Right-handed alpha
Helix 2
2
A
26 34Right-handed alpha
Helix 3
3
A
41 46Right-handed alpha
Helix 4
4
A
51 69Right-handed alpha
Helix 5
5
A
84 98Right-handed alpha
Helix 6
6
A
99 106Right-handed alpha
Helix 7
7
A
106 111Right-handed alpha
Helix 8
8
A
128 143Right-handed alpha
Helix 9
9
A
152 154Right-handed 310
Helix 10
10
A
155 174Right-handed alpha
Helix 11
11
A
207 211Right-handed 310
Helix 12
12
A
217 227Right-handed alpha
Helix 13
13
A
243 257Right-handed alpha
Helix 14
14
A
258 261Right-handed 310
Helix 15
15
A
262 270Right-handed alpha
Helix 16
16
A
272 277Right-handed alpha
Helix 17
17
A
278 280Right-handed 310
Helix 18
18
A
281 306Right-handed alpha
Helix 19
19
A
308 339Right-handed alpha
Helix 20
20
A
341 345Right-handed 310
Helix 21
21
B
16 23Right-handed alpha
Helix 22
22
B
26 34Right-handed alpha
Helix 23
23
B
41 46Right-handed alpha
Helix 24
24
B
51 70Right-handed alpha
Helix 25
25
B
84 97Right-handed alpha
Helix 26
26
B
99 105Right-handed alpha
Helix 27
27
B
106 114Right-handed alpha
Helix 28
28
B
128 143Right-handed alpha
Helix 29
29
B
152 154Right-handed 310
Helix 30
30
B
155 174Right-handed alpha
Helix 31
31
B
207 211Right-handed 310
Helix 32
32
B
217 227Right-handed alpha
Helix 33
33
B
243 258Right-handed alpha
Helix 34
34
B
262 270Right-handed alpha
Helix 35
35
B
272 277Right-handed alpha
Helix 36
36
B
278 280Right-handed 310
Helix 37
37
B
281 307Right-handed alpha
Helix 38
38
B
308 339Right-handed alpha
Helix 39
39
C
16 23Right-handed alpha
Helix 40
40
C
26 34Right-handed alpha
Helix 41
41
C
41 46Right-handed alpha
Helix 42
42
C
51 69Right-handed alpha
Helix 43
43
C
82 84Right-handed 310
Helix 44
44
C
85 97Right-handed alpha
Helix 45
45
C
99 106Right-handed alpha
Helix 46
46
C
106 111Right-handed alpha
Helix 47
47
C
112 114Right-handed 310
Helix 48
48
C
128 143Right-handed alpha
Helix 49
49
C
152 154Right-handed 310
Helix 50
50
C
155 174Right-handed alpha
Helix 51
51
C
207 211Right-handed 310
Helix 52
52
C
217 228Right-handed alpha
Helix 53
53
C
243 257Right-handed alpha
Helix 54
54
C
258 261Right-handed 310
Helix 55
55
C
262 270Right-handed alpha
Helix 56
56
C
272 277Right-handed alpha
Helix 57
57
C
281 306Right-handed alpha
Helix 58
58
C
308 339Right-handed alpha
Helix 59
59
C
341 346Right-handed 310
Helix 60
60
D
16 23Right-handed alpha
Helix 61
61
D
26 34Right-handed alpha
Helix 62
62
D
41 46Right-handed alpha
Helix 63
63
D
51 70Right-handed alpha
Helix 64
64
D
84 98Right-handed alpha
Helix 65
65
D
99 105Right-handed alpha
Helix 66
66
D
106 114Right-handed alpha
Helix 67
67
D
128 144Right-handed alpha
Helix 68
68
D
152 154Right-handed 310
Helix 69
69
D
155 174Right-handed alpha
Helix 70
70
D
207 211Right-handed 310
Helix 71
71
D
217 227Right-handed alpha
Helix 72
72
D
243 257Right-handed alpha
Helix 73
73
D
262 270Right-handed alpha
Helix 74
74
D
272 277Right-handed alpha
Helix 75
75
D
281 304Right-handed alpha
Helix 76
76
D
308 339Right-handed alpha
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There are 8 sheets in PDB entry 2YY5. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 9first strand
Strand 2
A
35 40parallel
Strand 3
A
76 80parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
148 150first strand
Strand 2
A
181 183parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 9first strand
Strand 2
B
35 40parallel
Strand 3
B
76 80parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
148 150first strand
Strand 2
B
181 183parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
4 9first strand
Strand 2
C
35 40parallel
Strand 3
C
76 80parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
148 150first strand
Strand 2
C
181 183parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
4 9first strand
Strand 2
D
35 40parallel
Strand 3
D
77 80parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
148 150first strand
Strand 2
D
181 183parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il