Analysis of interatomic Contacts of Structural Units in PDB entry:
2YY7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2YY7 entry

There are 2 chains in PDB entry 2YY7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1SER 312
B
 MET 1SER 312
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 2YY7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 27Right-handed alpha
Helix 2
2
A
41 46Right-handed alpha
Helix 3
3
A
56 67Right-handed alpha
Helix 4
4
A
79 86Right-handed alpha
Helix 5
5
A
86 107Right-handed alpha
Helix 6
6
A
120 122Right-handed 310
Helix 7
7
A
141 162Right-handed alpha
Helix 8
8
A
186 198Right-handed alpha
Helix 9
9
A
216 229Right-handed alpha
Helix 10
10
A
230 234Right-handed 310
Helix 11
11
A
248 258Right-handed alpha
Helix 12
12
A
271 277Right-handed alpha
Helix 13
13
A
285 293Right-handed alpha
Helix 14
14
A
299 312Right-handed alpha
Helix 15
15
B
12 27Right-handed alpha
Helix 16
16
B
41 46Right-handed alpha
Helix 17
17
B
56 67Right-handed alpha
Helix 18
18
B
79 86Right-handed alpha
Helix 19
19
B
86 107Right-handed alpha
Helix 20
20
B
120 122Right-handed 310
Helix 21
21
B
141 162Right-handed alpha
Helix 22
22
B
186 198Right-handed alpha
Helix 23
23
B
216 229Right-handed alpha
Helix 24
24
B
230 234Right-handed 310
Helix 25
25
B
248 260Right-handed alpha
Helix 26
26
B
270 277Right-handed alpha
Helix 27
27
B
285 293Right-handed alpha
Helix 28
28
B
299 312Right-handed alpha
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There are 8 sheets in PDB entry 2YY7. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 51first strand
Strand 2
A
31 35parallel
Strand 3
A
5 8parallel
Strand 4
A
71 74parallel
Strand 5
A
112 114parallel
Strand 6
A
164 166parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
117 118first strand
Strand 2
A
168 170parallel
Strand 3
A
240 241parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
172 174first strand
Strand 2
A
211 215parallel
Strand 3
A
245 247anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
200 203first strand
Strand 2
A
264 267parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
49 51first strand
Strand 2
B
31 35parallel
Strand 3
B
5 8parallel
Strand 4
B
71 74parallel
Strand 5
B
112 114parallel
Strand 6
B
165 166parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
117 118first strand
Strand 2
B
168 170parallel
Strand 3
B
240 241parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
172 174first strand
Strand 2
B
211 215parallel
Strand 3
B
245 247anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
200 203first strand
Strand 2
B
264 267parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il