Analysis of interatomic Contacts of Structural Units in PDB entry:
2YY8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2YY8 entry

There are 2 chains in PDB entry 2YY8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLN 175
B
 MET 1VAL 174
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 2YY8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
15 28Right-handed alpha
Helix 2
2
A
40 55Right-handed alpha
Helix 3
3
A
65 73Right-handed alpha
Helix 4
4
A
87 100Right-handed alpha
Helix 5
5
A
114 121Right-handed alpha
Helix 6
6
A
133 146Right-handed alpha
Helix 7
7
A
148 153Right-handed 310
Helix 8
8
B
10 28Right-handed alpha
Helix 9
9
B
40 55Right-handed alpha
Helix 10
10
B
65 73Right-handed alpha
Helix 11
11
B
90 100Right-handed alpha
Helix 12
12
B
114 121Right-handed alpha
Helix 13
13
B
133 147Right-handed alpha
Helix 14
14
B
149 153Right-handed 310
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There are 4 sheets in PDB entry 2YY8. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 35first strand
Strand 2
A
2 6parallel
Strand 3
A
104 108parallel
Strand 4
A
76 80parallel
Strand 5
A
123 126parallel
Strand 6
A
85 86parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
160 162first strand
Strand 2
A
171 173anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
59 62first strand
Strand 2
B
32 35parallel
Strand 3
B
2 6parallel
Strand 4
B
104 108parallel
Strand 5
B
76 80parallel
Strand 6
B
123 126parallel
Strand 7
B
85 86parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
160 162first strand
Strand 2
B
171 173anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il