Analysis of interatomic Contacts of Structural Units in PDB entry:
2YYB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2YYB entry

There are 2 chains in PDB entry 2YYB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 242
B
 MET 1LEU 242
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 2YYB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 14Right-handed alpha
Helix 2
2
A
15 19Right-handed 310
Helix 3
3
A
46 56Right-handed alpha
Helix 4
4
A
76 89Right-handed alpha
Helix 5
5
A
97 103Right-handed alpha
Helix 6
6
A
107 115Right-handed alpha
Helix 7
7
A
140 148Right-handed alpha
Helix 8
8
A
173 180Right-handed 310
Helix 9
9
A
191 193Right-handed 310
Helix 10
10
A
194 201Right-handed alpha
Helix 11
11
A
209 214Right-handed alpha
Helix 12
12
A
215 230Right-handed alpha
Helix 13
13
B
2 15Right-handed alpha
Helix 14
14
B
16 19Right-handed 310
Helix 15
15
B
46 56Right-handed alpha
Helix 16
16
B
76 89Right-handed alpha
Helix 17
17
B
97 103Right-handed alpha
Helix 18
18
B
107 116Right-handed alpha
Helix 19
19
B
138 150Right-handed alpha
Helix 20
20
B
173 180Right-handed 310
Helix 21
21
B
191 193Right-handed 310
Helix 22
22
B
194 201Right-handed alpha
Helix 23
23
B
209 214Right-handed alpha
Helix 24
24
B
215 230Right-handed alpha
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There are 4 sheets in PDB entry 2YYB. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 30first strand
Strand 2
A
92 95anti-parallel
Strand 3
A
60 65parallel
Strand 4
A
39 44parallel
Strand 5
A
233 235parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
154 157first strand
Strand 2
A
204 207anti-parallel
Strand 3
A
184 187parallel
Strand 4
A
166 169parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
27 30first strand
Strand 2
B
92 95anti-parallel
Strand 3
B
60 65parallel
Strand 4
B
39 44parallel
Strand 5
B
233 235parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
119 124first strand
Strand 2
B
127 137anti-parallel
Strand 3
B
162 169anti-parallel
Strand 4
B
184 187parallel
Strand 5
B
204 207parallel
Strand 6
B
154 157anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il