Analysis of interatomic Contacts of Structural Units in PDB entry:
2YYE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2YYE entry

There are 2 chains in PDB entry 2YYE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY -6LEU 336
B
 GLY -6LEU 336
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 2YYE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
3 8Right-handed 310
Helix 2
2
A
20 28Right-handed alpha
Helix 3
3
A
68 86Right-handed alpha
Helix 4
4
A
106 124Right-handed alpha
Helix 5
5
A
150 153Right-handed 310
Helix 6
6
A
173 183Right-handed alpha
Helix 7
7
A
187 190Right-handed 310
Helix 8
8
A
191 200Right-handed alpha
Helix 9
9
A
202 212Right-handed alpha
Helix 10
10
A
223 237Right-handed alpha
Helix 11
11
A
245 247Right-handed 310
Helix 12
12
A
250 258Right-handed alpha
Helix 13
13
A
263 274Right-handed alpha
Helix 14
14
A
282 291Right-handed alpha
Helix 15
15
A
303 308Right-handed 310
Helix 16
16
A
309 318Right-handed alpha
Helix 17
17
B
3 8Right-handed 310
Helix 18
18
B
20 26Right-handed alpha
Helix 19
19
B
27 29Right-handed 310
Helix 20
20
B
68 86Right-handed alpha
Helix 21
21
B
106 124Right-handed alpha
Helix 22
22
B
150 153Right-handed 310
Helix 23
23
B
173 183Right-handed alpha
Helix 24
24
B
187 190Right-handed 310
Helix 25
25
B
191 200Right-handed alpha
Helix 26
26
B
202 212Right-handed alpha
Helix 27
27
B
223 236Right-handed alpha
Helix 28
28
B
245 247Right-handed 310
Helix 29
29
B
250 259Right-handed alpha
Helix 30
30
B
263 273Right-handed alpha
Helix 31
31
B
282 291Right-handed alpha
Helix 32
32
B
306 318Right-handed alpha
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There are 4 sheets in PDB entry 2YYE. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
37 39first strand
Strand 2
A
46 50anti-parallel
Strand 3
A
53 62anti-parallel
Strand 4
A
140 148anti-parallel
Strand 5
A
90 99anti-parallel
Strand 6
A
127 134parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
217 219first strand
Strand 2
A
298 302anti-parallel
Strand 3
A
165 168anti-parallel
Strand 4
A
322 328anti-parallel
Strand 5
A
239 243anti-parallel
Strand 6
A
333 336parallel
Strand 7
A
277 278parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
37 39first strand
Strand 2
B
46 50anti-parallel
Strand 3
B
53 62anti-parallel
Strand 4
B
140 148anti-parallel
Strand 5
B
90 100anti-parallel
Strand 6
B
127 135parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
216 219first strand
Strand 2
B
298 303anti-parallel
Strand 3
B
164 168anti-parallel
Strand 4
B
322 328anti-parallel
Strand 5
B
239 243anti-parallel
Strand 6
B
333 336parallel
Strand 7
B
277 278parallel
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