Analysis of interatomic Contacts of Structural Units in PDB entry:
2YYT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2YYT entry

There are 4 chains in PDB entry 2YYT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 6ASN 236
B
 PRO 6ASN 236
C
 PRO 6ASN 236
D
 PRO 6ASN 236
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 52 helices in PDB entry 2YYT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
15 24Right-handed alpha
Helix 2
2
A
25 29Right-handed 310
Helix 3
3
A
37 44Right-handed alpha
Helix 4
4
A
45 55Right-handed alpha
Helix 5
5
A
67 82Right-handed alpha
Helix 6
6
A
93 107Right-handed alpha
Helix 7
7
A
127 134Right-handed alpha
Helix 8
8
A
140 156Right-handed alpha
Helix 9
9
A
163 165Right-handed 310
Helix 10
10
A
166 175Right-handed alpha
Helix 11
11
A
200 207Right-handed alpha
Helix 12
12
A
215 220Right-handed alpha
Helix 13
13
A
223 236Right-handed alpha
Helix 14
14
B
15 24Right-handed alpha
Helix 15
15
B
25 29Right-handed 310
Helix 16
16
B
37 44Right-handed alpha
Helix 17
17
B
44 55Right-handed alpha
Helix 18
18
B
67 82Right-handed alpha
Helix 19
19
B
93 107Right-handed alpha
Helix 20
20
B
127 134Right-handed alpha
Helix 21
21
B
140 156Right-handed alpha
Helix 22
22
B
163 165Right-handed 310
Helix 23
23
B
166 175Right-handed alpha
Helix 24
24
B
200 207Right-handed alpha
Helix 25
25
B
215 220Right-handed alpha
Helix 26
26
B
223 236Right-handed alpha
Helix 27
27
C
15 24Right-handed alpha
Helix 28
28
C
25 28Right-handed 310
Helix 29
29
C
37 44Right-handed alpha
Helix 30
30
C
45 54Right-handed alpha
Helix 31
31
C
67 82Right-handed alpha
Helix 32
32
C
93 107Right-handed alpha
Helix 33
33
C
127 134Right-handed alpha
Helix 34
34
C
140 155Right-handed alpha
Helix 35
35
C
163 165Right-handed 310
Helix 36
36
C
166 175Right-handed alpha
Helix 37
37
C
200 207Right-handed alpha
Helix 38
38
C
215 220Right-handed alpha
Helix 39
39
C
223 236Right-handed alpha
Helix 40
40
D
15 24Right-handed alpha
Helix 41
41
D
25 28Right-handed 310
Helix 42
42
D
37 44Right-handed alpha
Helix 43
43
D
45 54Right-handed alpha
Helix 44
44
D
67 82Right-handed alpha
Helix 45
45
D
93 107Right-handed alpha
Helix 46
46
D
127 134Right-handed alpha
Helix 47
47
D
140 155Right-handed alpha
Helix 48
48
D
163 165Right-handed 310
Helix 49
49
D
166 175Right-handed alpha
Helix 50
50
D
200 207Right-handed alpha
Helix 51
51
D
215 220Right-handed alpha
Helix 52
52
D
223 236Right-handed alpha
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There are 4 sheets in PDB entry 2YYT. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
7 10first strand
Strand 2
A
32 36parallel
Strand 3
A
57 64parallel
Strand 4
A
85 89parallel
Strand 5
A
116 120parallel
Strand 6
A
159 161parallel
Strand 7
A
179 182parallel
Strand 8
A
211 214parallel
Strand 9
A
7 10parallel
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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
7 10first strand
Strand 2
B
32 36parallel
Strand 3
B
57 64parallel
Strand 4
B
85 89parallel
Strand 5
B
116 120parallel
Strand 6
B
159 161parallel
Strand 7
B
179 182parallel
Strand 8
B
211 214parallel
Strand 9
B
7 10parallel
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There are 9 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
7 10first strand
Strand 2
C
32 36parallel
Strand 3
C
57 64parallel
Strand 4
C
85 89parallel
Strand 5
C
116 120parallel
Strand 6
C
159 161parallel
Strand 7
C
179 182parallel
Strand 8
C
211 214parallel
Strand 9
C
7 10parallel
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There are 9 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
7 10first strand
Strand 2
D
32 36parallel
Strand 3
D
57 64parallel
Strand 4
D
85 89parallel
Strand 5
D
116 120parallel
Strand 6
D
159 161parallel
Strand 7
D
179 182parallel
Strand 8
D
211 214parallel
Strand 9
D
7 10parallel
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