Analysis of interatomic Contacts of Structural Units in PDB entry:
2YYV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2YYV entry

There are 2 chains in PDB entry 2YYV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 2LYS 224
B
 VAL 2GLU 225
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 2YYV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
24 35Right-handed alpha
Helix 2
2
A
45 52Right-handed alpha
Helix 3
3
A
76 80Right-handed 310
Helix 4
4
A
81 86Right-handed alpha
Helix 5
5
A
96 103Right-handed alpha
Helix 6
6
A
113 115Right-handed 310
Helix 7
7
A
116 125Right-handed alpha
Helix 8
8
A
142 157Right-handed alpha
Helix 9
9
A
162 174Right-handed alpha
Helix 10
10
A
177 186Right-handed alpha
Helix 11
11
A
186 195Right-handed alpha
Helix 12
12
A
197 205Right-handed alpha
Helix 13
13
B
24 35Right-handed alpha
Helix 14
14
B
45 51Right-handed alpha
Helix 15
15
B
76 80Right-handed 310
Helix 16
16
B
81 86Right-handed alpha
Helix 17
17
B
98 103Right-handed alpha
Helix 18
18
B
113 115Right-handed 310
Helix 19
19
B
116 125Right-handed alpha
Helix 20
20
B
142 157Right-handed alpha
Helix 21
21
B
162 175Right-handed alpha
Helix 22
22
B
177 186Right-handed alpha
Helix 23
23
B
186 195Right-handed alpha
Helix 24
24
B
197 205Right-handed alpha
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There are 8 sheets in PDB entry 2YYV. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 6first strand
Strand 2
A
130 134parallel
Strand 3
A
16 20parallel
Strand 4
A
109 112parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 13first strand
Strand 2
A
104 105parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 42first strand
Strand 2
A
89 93parallel
Strand 3
A
57 61parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
215 217first strand
Strand 2
A
220 222anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 6first strand
Strand 2
B
130 134parallel
Strand 3
B
16 20parallel
Strand 4
B
108 112parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
12 13first strand
Strand 2
B
104 105parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
39 42first strand
Strand 2
B
89 93parallel
Strand 3
B
57 61parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
215 217first strand
Strand 2
B
220 222anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il