Analysis of interatomic Contacts of Structural Units in PDB entry:
2YYY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2YYY entry

There are 2 chains in PDB entry 2YYY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 2GLN 343
B
 PRO 2GLN 343
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 2YYY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
11 24Right-handed alpha
Helix 2
2
A
38 47Right-handed alpha
Helix 3
3
A
57 67Right-handed alpha
Helix 4
4
A
74 82Right-handed 310
Helix 5
5
A
92 101Right-handed alpha
Helix 6
6
A
116 120Right-handed 310
Helix 7
7
A
129 134Right-handed alpha
Helix 8
8
A
143 158Right-handed alpha
Helix 9
9
A
197 206Right-handed alpha
Helix 10
10
A
207 210Right-handed 310
Helix 11
11
A
239 250Right-handed alpha
Helix 12
12
A
257 261Right-handed 310
Helix 13
13
A
264 276Right-handed alpha
Helix 14
14
A
277 281Right-handed 310
Helix 15
15
A
290 292Right-handed 310
Helix 16
16
A
311 323Right-handed alpha
Helix 17
17
A
328 341Right-handed alpha
Helix 18
18
B
11 24Right-handed alpha
Helix 19
19
B
38 47Right-handed alpha
Helix 20
20
B
57 68Right-handed alpha
Helix 21
21
B
74 82Right-handed 310
Helix 22
22
B
92 101Right-handed alpha
Helix 23
23
B
116 120Right-handed 310
Helix 24
24
B
143 158Right-handed alpha
Helix 25
25
B
197 206Right-handed alpha
Helix 26
26
B
207 210Right-handed 310
Helix 27
27
B
239 250Right-handed alpha
Helix 28
28
B
257 261Right-handed 310
Helix 29
29
B
264 276Right-handed alpha
Helix 30
30
B
277 281Right-handed 310
Helix 31
31
B
290 292Right-handed 310
Helix 32
32
B
311 323Right-handed alpha
Helix 33
33
B
328 341Right-handed alpha
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There are 6 sheets in PDB entry 2YYY. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
51 53first strand
Strand 2
A
27 34parallel
Strand 3
A
3 8parallel
Strand 4
A
84 87parallel
Strand 5
A
108 111parallel
Strand 6
A
138 141parallel
Strand 7
A
122 124parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
188 189first strand
Strand 2
A
213 220anti-parallel
Strand 3
A
161 172parallel
Strand 4
A
226 235anti-parallel
Strand 5
A
298 305anti-parallel
Strand 6
A
285 288anti-parallel
Strand 7
A
253 256parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
188 189first strand
Strand 2
A
213 220anti-parallel
Strand 3
A
161 172parallel
Strand 4
A
226 235anti-parallel
Strand 5
A
298 305anti-parallel
Strand 6
A
293 295anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
51 53first strand
Strand 2
B
27 34parallel
Strand 3
B
3 8parallel
Strand 4
B
84 87parallel
Strand 5
B
108 111parallel
Strand 6
B
138 141parallel
Strand 7
B
122 124parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
188 189first strand
Strand 2
B
213 220anti-parallel
Strand 3
B
161 172parallel
Strand 4
B
226 235anti-parallel
Strand 5
B
298 305anti-parallel
Strand 6
B
285 288anti-parallel
Strand 7
B
253 256parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
188 189first strand
Strand 2
B
213 220anti-parallel
Strand 3
B
161 172parallel
Strand 4
B
226 235anti-parallel
Strand 5
B
298 305anti-parallel
Strand 6
B
293 295anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il