Analysis of interatomic Contacts of Structural Units in PDB entry:
2YZ3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2YZ3 entry

There are 2 chains in PDB entry 2YZ3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 12VAL 236
B
 GLU 12VAL 236
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 2YZ3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
15 19Right-handed 310
Helix 2
2
A
68 83Right-handed alpha
Helix 3
3
A
96 101Right-handed alpha
Helix 4
4
A
102 109Right-handed alpha
Helix 5
5
A
116 125Right-handed alpha
Helix 6
6
A
169 171Right-handed 310
Helix 7
7
A
178 180Right-handed 310
Helix 8
8
A
198 210Right-handed alpha
Helix 9
9
A
226 236Right-handed alpha
Helix 10
10
B
15 19Right-handed 310
Helix 11
11
B
68 83Right-handed alpha
Helix 12
12
B
96 101Right-handed alpha
Helix 13
13
B
102 109Right-handed alpha
Helix 14
14
B
116 127Right-handed alpha
Helix 15
15
B
178 180Right-handed 310
Helix 16
16
B
198 210Right-handed alpha
Helix 17
17
B
226 236Right-handed alpha
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There are 4 sheets in PDB entry 2YZ3. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
24 30first strand
Strand 2
A
33 42anti-parallel
Strand 3
A
45 56anti-parallel
Strand 4
A
59 63anti-parallel
Strand 5
A
87 91parallel
Strand 6
A
112 115parallel
Strand 7
A
133 134parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
143 147first strand
Strand 2
A
150 154anti-parallel
Strand 3
A
165 168anti-parallel
Strand 4
A
173 177anti-parallel
Strand 5
A
215 218parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
25 30first strand
Strand 2
B
33 42anti-parallel
Strand 3
B
45 56anti-parallel
Strand 4
B
59 63anti-parallel
Strand 5
B
87 91parallel
Strand 6
B
112 115parallel
Strand 7
B
133 134parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
143 147first strand
Strand 2
B
150 154anti-parallel
Strand 3
B
165 168anti-parallel
Strand 4
B
173 177anti-parallel
Strand 5
B
215 218parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il