Analysis of interatomic Contacts of Structural Units in PDB entry:
2YZE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 2YZE entry

There are 8 chains in PDB entry 2YZE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 11	ASN 297
B	THR 11	ASN 297
C	THR 11	ASN 297
D	THR 11	ASN 297
E	THR 11	ASN 297
F	THR 11	ASN 297
G	THR 11	ASN 297
H	THR 11	ASN 297

There are 57 helices in PDB entry 2YZE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	52	59	Right-handed alpha
Helix 2	2	A	66	79	Right-handed alpha
Helix 3	3	A	84	100	Right-handed alpha
Helix 4	4	A	198	217	Right-handed alpha
Helix 5	5	A	221	237	Right-handed alpha
Helix 6	6	A	257	261	Right-handed 310
Helix 7	7	A	292	296	Right-handed 310
Helix 8	8	B	52	58	Right-handed alpha
Helix 9	9	B	60	64	Right-handed 310
Helix 10	10	B	66	79	Right-handed alpha
Helix 11	11	B	84	100	Right-handed alpha
Helix 12	12	B	198	217	Right-handed alpha
Helix 13	13	B	221	237	Right-handed alpha
Helix 14	14	B	257	261	Right-handed 310
Helix 15	15	B	292	296	Right-handed 310
Helix 16	16	C	52	59	Right-handed alpha
Helix 17	17	C	66	79	Right-handed alpha
Helix 18	18	C	84	100	Right-handed alpha
Helix 19	19	C	198	217	Right-handed alpha
Helix 20	20	C	221	237	Right-handed alpha
Helix 21	21	C	257	261	Right-handed 310
Helix 22	22	C	292	296	Right-handed 310
Helix 23	23	D	52	59	Right-handed alpha
Helix 24	24	D	66	79	Right-handed alpha
Helix 25	25	D	84	100	Right-handed alpha
Helix 26	26	D	198	217	Right-handed alpha
Helix 27	27	D	221	237	Right-handed alpha
Helix 28	28	D	257	261	Right-handed 310
Helix 29	29	D	292	296	Right-handed 310
Helix 30	30	E	52	58	Right-handed alpha
Helix 31	31	E	66	79	Right-handed alpha
Helix 32	32	E	84	100	Right-handed alpha
Helix 33	33	E	198	217	Right-handed alpha
Helix 34	34	E	221	237	Right-handed alpha
Helix 35	35	E	257	261	Right-handed 310
Helix 36	36	E	292	296	Right-handed 310
Helix 37	37	F	52	58	Right-handed alpha
Helix 38	38	F	66	79	Right-handed alpha
Helix 39	39	F	84	100	Right-handed alpha
Helix 40	40	F	198	217	Right-handed alpha
Helix 41	41	F	221	237	Right-handed alpha
Helix 42	42	F	257	261	Right-handed 310
Helix 43	43	F	292	296	Right-handed 310
Helix 44	44	G	52	58	Right-handed alpha
Helix 45	45	G	66	79	Right-handed alpha
Helix 46	46	G	84	100	Right-handed alpha
Helix 47	47	G	198	217	Right-handed alpha
Helix 48	48	G	221	237	Right-handed alpha
Helix 49	49	G	257	261	Right-handed 310
Helix 50	50	G	292	296	Right-handed 310
Helix 51	51	H	52	59	Right-handed alpha
Helix 52	52	H	66	79	Right-handed alpha
Helix 53	53	H	84	100	Right-handed alpha
Helix 54	54	H	198	217	Right-handed alpha
Helix 55	55	H	221	237	Right-handed alpha
Helix 56	56	H	257	261	Right-handed 310
Helix 57	57	H	292	296	Right-handed 310

There are 6 sheets in PDB entry 2YZE. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 25 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	252	254	first strand
Strand 2	A	268	271	anti-parallel
Strand 3	B	13	31	anti-parallel
Strand 4	B	38	50	anti-parallel
Strand 5	B	103	117	anti-parallel
Strand 6	B	124	140	anti-parallel
Strand 7	B	143	157	anti-parallel
Strand 8	A	124	140	anti-parallel
Strand 9	A	143	157	anti-parallel
Strand 10	A	182	192	anti-parallel
Strand 11	A	240	249	anti-parallel
Strand 12	A	276	285	anti-parallel
Strand 13	D	13	31	anti-parallel
Strand 14	D	38	50	anti-parallel
Strand 15	D	103	117	anti-parallel
Strand 16	D	124	140	anti-parallel
Strand 17	C	143	157	anti-parallel
Strand 18	C	124	140	anti-parallel
Strand 19	D	143	157	anti-parallel
Strand 20	D	182	192	anti-parallel
Strand 21	D	240	249	anti-parallel
Strand 22	D	276	285	anti-parallel
Strand 23	A	13	31	anti-parallel
Strand 24	B	268	271	anti-parallel
Strand 25	B	252	254	anti-parallel

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There are 16 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	252	254	first strand
Strand 2	C	268	271	anti-parallel
Strand 3	D	13	31	anti-parallel
Strand 4	D	38	50	anti-parallel
Strand 5	D	103	117	anti-parallel
Strand 6	D	124	140	anti-parallel
Strand 7	C	143	157	anti-parallel
Strand 8	C	124	140	anti-parallel
Strand 9	D	143	157	anti-parallel
Strand 10	D	38	50	first strand
Strand 11	C	143	157	first strand
Strand 12	C	124	140	anti-parallel
Strand 13	C	103	117	anti-parallel
Strand 14	C	38	50	anti-parallel
Strand 15	D	268	271	first strand
Strand 16	D	252	254	anti-parallel

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There are 29 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	252	254	first strand
Strand 2	A	268	271	anti-parallel
Strand 3	B	13	31	anti-parallel
Strand 4	B	38	50	anti-parallel
Strand 5	B	103	117	anti-parallel
Strand 6	B	124	140	anti-parallel
Strand 7	B	143	157	anti-parallel
Strand 8	B	182	192	anti-parallel
Strand 9	B	240	249	anti-parallel
Strand 10	B	276	285	anti-parallel
Strand 11	C	13	31	anti-parallel
Strand 12	C	38	50	anti-parallel
Strand 13	C	103	117	anti-parallel
Strand 14	C	124	140	anti-parallel
Strand 15	C	143	157	anti-parallel
Strand 16	C	182	192	anti-parallel
Strand 17	C	240	249	anti-parallel
Strand 18	C	276	285	anti-parallel
Strand 19	B	13	31	anti-parallel
Strand 20	B	38	50	anti-parallel
Strand 21	B	103	117	anti-parallel
Strand 22	B	124	140	anti-parallel
Strand 23	A	143	157	anti-parallel
Strand 24	A	124	140	anti-parallel
Strand 25	A	103	117	anti-parallel
Strand 26	A	38	50	anti-parallel
Strand 27	A	13	31	anti-parallel
Strand 28	B	268	271	anti-parallel
Strand 29	B	252	254	anti-parallel

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There are 25 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	252	254	first strand
Strand 2	E	268	271	anti-parallel
Strand 3	F	13	31	anti-parallel
Strand 4	F	38	50	anti-parallel
Strand 5	F	103	117	anti-parallel
Strand 6	F	124	140	anti-parallel
Strand 7	F	143	157	anti-parallel
Strand 8	E	124	140	anti-parallel
Strand 9	E	143	157	anti-parallel
Strand 10	E	182	192	anti-parallel
Strand 11	E	240	249	anti-parallel
Strand 12	E	276	285	anti-parallel
Strand 13	H	13	31	anti-parallel
Strand 14	H	38	50	anti-parallel
Strand 15	H	103	117	anti-parallel
Strand 16	H	124	140	anti-parallel
Strand 17	G	143	157	anti-parallel
Strand 18	G	124	140	anti-parallel
Strand 19	H	143	157	anti-parallel
Strand 20	H	182	192	anti-parallel
Strand 21	H	240	249	anti-parallel
Strand 22	H	276	285	anti-parallel
Strand 23	E	13	31	anti-parallel
Strand 24	F	268	271	anti-parallel
Strand 25	F	252	254	anti-parallel

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There are 16 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	252	254	first strand
Strand 2	G	268	271	anti-parallel
Strand 3	H	13	31	anti-parallel
Strand 4	H	38	50	anti-parallel
Strand 5	H	103	117	anti-parallel
Strand 6	H	124	140	anti-parallel
Strand 7	G	143	157	anti-parallel
Strand 8	G	124	140	anti-parallel
Strand 9	H	143	157	anti-parallel
Strand 10	H	38	50	first strand
Strand 11	G	143	157	first strand
Strand 12	G	124	140	anti-parallel
Strand 13	G	103	117	anti-parallel
Strand 14	G	38	50	anti-parallel
Strand 15	H	268	271	first strand
Strand 16	H	252	254	anti-parallel

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There are 29 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	252	254	first strand
Strand 2	E	268	271	anti-parallel
Strand 3	F	13	31	anti-parallel
Strand 4	F	38	50	anti-parallel
Strand 5	F	103	117	anti-parallel
Strand 6	F	124	140	anti-parallel
Strand 7	F	143	157	anti-parallel
Strand 8	F	182	192	anti-parallel
Strand 9	F	240	249	anti-parallel
Strand 10	F	276	285	anti-parallel
Strand 11	G	13	31	anti-parallel
Strand 12	G	38	50	anti-parallel
Strand 13	G	103	117	anti-parallel
Strand 14	G	124	140	anti-parallel
Strand 15	G	143	157	anti-parallel
Strand 16	G	182	192	anti-parallel
Strand 17	G	240	249	anti-parallel
Strand 18	G	276	285	anti-parallel
Strand 19	F	13	31	anti-parallel
Strand 20	F	38	50	anti-parallel
Strand 21	F	103	117	anti-parallel
Strand 22	F	124	140	anti-parallel
Strand 23	E	143	157	anti-parallel
Strand 24	E	124	140	anti-parallel
Strand 25	E	103	117	anti-parallel
Strand 26	E	38	50	anti-parallel
Strand 27	E	13	31	anti-parallel
Strand 28	F	268	271	anti-parallel
Strand 29	F	252	254	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 2YZE

Analysis of interatomic Contacts of Structural Units in PDB entry:
2YZE