Analysis of interatomic Contacts of Structural Units in PDB entry:
2YZG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2YZG entry

There are 3 chains in PDB entry 2YZG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 1THR 319
B
 MSE 1THR 319
C
 MSE 1THR 319
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 2YZG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
13 28Right-handed alpha
Helix 2
2
A
45 55Right-handed alpha
Helix 3
3
A
70 74Right-handed 310
Helix 4
4
A
89 98Right-handed alpha
Helix 5
5
A
106 114Right-handed alpha
Helix 6
6
A
115 126Right-handed alpha
Helix 7
7
A
168 180Right-handed alpha
Helix 8
8
A
243 261Right-handed alpha
Helix 9
9
A
293 302Right-handed alpha
Helix 10
10
A
305 318Right-handed alpha
Helix 11
11
B
13 26Right-handed alpha
Helix 12
12
B
45 56Right-handed alpha
Helix 13
13
B
70 74Right-handed 310
Helix 14
14
B
89 99Right-handed alpha
Helix 15
15
B
106 114Right-handed alpha
Helix 16
16
B
117 126Right-handed alpha
Helix 17
17
B
168 170Right-handed 310
Helix 18
18
B
171 180Right-handed alpha
Helix 19
19
B
245 262Right-handed alpha
Helix 20
20
B
293 302Right-handed alpha
Helix 21
21
B
305 317Right-handed alpha
Helix 22
22
C
13 26Right-handed alpha
Helix 23
23
C
45 55Right-handed alpha
Helix 24
24
C
70 74Right-handed 310
Helix 25
25
C
89 99Right-handed alpha
Helix 26
26
C
106 115Right-handed alpha
Helix 27
27
C
117 127Right-handed alpha
Helix 28
28
C
168 170Right-handed 310
Helix 29
29
C
171 180Right-handed alpha
Helix 30
30
C
243 262Right-handed alpha
Helix 31
31
C
293 302Right-handed alpha
Helix 32
32
C
305 319Right-handed alpha
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There are 10 sheets in PDB entry 2YZG. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 44first strand
Strand 2
A
32 37anti-parallel
Strand 3
A
3 8parallel
Strand 4
A
76 79parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
133 137first strand
Strand 2
A
185 190anti-parallel
Strand 3
A
150 154anti-parallel
Strand 4
A
164 166anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
233 237first strand
Strand 2
A
209 219anti-parallel
Strand 3
A
196 203anti-parallel
Strand 4
A
266 274anti-parallel
Strand 5
A
277 284anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
222 224first strand
Strand 2
A
228 230anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
43 44first strand
Strand 2
B
32 37anti-parallel
Strand 3
B
3 8parallel
Strand 4
B
76 79parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
133 137first strand
Strand 2
B
185 190anti-parallel
Strand 3
B
150 154anti-parallel
Strand 4
B
164 166anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
234 237first strand
Strand 2
B
209 218anti-parallel
Strand 3
B
196 203anti-parallel
Strand 4
B
266 274anti-parallel
Strand 5
B
277 284anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
43 44first strand
Strand 2
C
32 37anti-parallel
Strand 3
C
3 8parallel
Strand 4
C
76 79parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
133 137first strand
Strand 2
C
185 190anti-parallel
Strand 3
C
150 154anti-parallel
Strand 4
C
164 166anti-parallel
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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
234 237first strand
Strand 2
C
209 218anti-parallel
Strand 3
C
196 203anti-parallel
Strand 4
C
266 274anti-parallel
Strand 5
C
277 284anti-parallel
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