Analysis of interatomic Contacts of Structural Units in PDB entry:
2YZQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2YZQ entry

There is 1 chain in PDB entry 2YZQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1VAL 278
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 2YZQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 7Right-handed alpha
Helix 2
2
A
78 90Right-handed alpha
Helix 3
3
A
109 116Right-handed alpha
Helix 4
4
A
121 126Right-handed 310
Helix 5
5
A
144 154Right-handed alpha
Helix 6
6
A
176 185Right-handed 310
Helix 7
7
A
222 226Right-handed 310
Helix 8
8
A
239 251Right-handed alpha
Helix 9
9
A
270 274Right-handed alpha
Helix 10
10
A
275 278Right-handed 310
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There are 4 sheets in PDB entry 2YZQ. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 9first strand
Strand 2
A
103 108anti-parallel
Strand 3
A
93 97anti-parallel
Strand 4
A
72 74parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
14 15first strand
Strand 2
A
34 38parallel
Strand 3
A
44 49anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
139 140first strand
Strand 2
A
159 163parallel
Strand 3
A
169 174anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
254 259first strand
Strand 2
A
263 269anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il